[PATCH 0/7] merge-ort: implement support for packing objects together

[PATCH 0/7] merge-ort: implement support for packing objects together

[Taylor Blau]

(Based on the tip of 'eb/limit-bulk-checkin-to-blobs'.)

This series implements support for a new merge-tree option,
`--write-pack`, which causes any newly-written objects to be packed
together instead of being stored individually as loose.

The motivating use-case behind these changes is to better support
repositories who invoke merge-tree frequently, generating a potentially
large number of loose objects, resulting in a possible adverse effect on
performance.

The majority of the changes here are preparatory to refactor common
routines out of the bulk-checkin machinery to prepare for indexing
different types of objects whose contents can be held in-core.

Also worth noting is the relative ease this series can be adapted to
support the $NEW_HASH interop work in 'eb/hash-transition-rfc'. For more
details on the relatively small number of changes necessary to make that
work, see the log message of the second-to-last patch.

Thanks in advance for your review!

Taylor Blau (7):
  bulk-checkin: factor out `format_object_header_hash()`
  bulk-checkin: factor out `prepare_checkpoint()`
  bulk-checkin: factor out `truncate_checkpoint()`
  bulk-checkin: factor our `finalize_checkpoint()`
  bulk-checkin: introduce `index_blob_bulk_checkin_incore()`
  bulk-checkin: introduce `index_tree_bulk_checkin_incore()`
  builtin/merge-tree.c: implement support for `--write-pack`

 Documentation/git-merge-tree.txt |   4 +
 builtin/merge-tree.c             |   5 +
 bulk-checkin.c                   | 249 ++++++++++++++++++++++++++-----
 bulk-checkin.h                   |   8 +
 merge-ort.c                      |  43 ++++--
 merge-recursive.h                |   1 +
 t/t4301-merge-tree-write-tree.sh |  93 ++++++++++++
 7 files changed, 355 insertions(+), 48 deletions(-)

-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 1/7] bulk-checkin: factor out `format_object_header_hash()`

[Taylor Blau]

Before deflating a blob into a pack, the bulk-checkin mechanism prepares
the pack object header by calling `format_object_header()`, and writing
into a scratch buffer, the contents of which eventually makes its way
into the pack.

Future commits will add support for deflating multiple kinds of objects
into a pack, and will likewise need to perform a similar operation as
below.

This is a mostly straightforward extraction, with one notable exception.
Instead of hard-coding `the_hash_algo`, pass it in to the new function
as an argument. This isn't strictly necessary for our immediate purposes
here, but will prove useful in the future if/when the bulk-checkin
mechanism grows support for the hash transition plan.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 20 ++++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 223562b4e7..0aac3dfe31 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -247,6 +247,19 @@ static void prepare_to_stream(struct bulk_checkin_packfile *state,
 		die_errno("unable to write pack header");
 }
 
+static void format_object_header_hash(const struct git_hash_algo *algop,
+				      git_hash_ctx *ctx, enum object_type type,
+				      size_t size)
+{
+	unsigned char header[16384];
+	unsigned header_len = format_object_header((char *)header,
+						   sizeof(header),
+						   type, size);
+
+	algop->init_fn(ctx);
+	algop->update_fn(ctx, header, header_len);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -254,8 +267,6 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 {
 	off_t seekback, already_hashed_to;
 	git_hash_ctx ctx;
-	unsigned char obuf[16384];
-	unsigned header_len;
 	struct hashfile_checkpoint checkpoint = {0};
 	struct pack_idx_entry *idx = NULL;
 
@@ -263,10 +274,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	if (seekback == (off_t) -1)
 		return error("cannot find the current offset");
 
-	header_len = format_object_header((char *)obuf, sizeof(obuf),
-					  OBJ_BLOB, size);
-	the_hash_algo->init_fn(&ctx);
-	the_hash_algo->update_fn(&ctx, obuf, header_len);
+	format_object_header_hash(the_hash_algo, &ctx, OBJ_BLOB, size);
 
 	/* Note: idx is non-NULL when we are writing */
 	if ((flags & HASH_WRITE_OBJECT) != 0)
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 2/7] bulk-checkin: factor out `prepare_checkpoint()`

[Taylor Blau]

In a similar spirit as the previous commit, factor out the routine to
prepare streaming into a bulk-checkin pack into its own function. Unlike
the previous patch, this is a verbatim copy and paste.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 20 ++++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 0aac3dfe31..377c41f3ad 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -260,6 +260,19 @@ static void format_object_header_hash(const struct git_hash_algo *algop,
 	algop->update_fn(ctx, header, header_len);
 }
 
+static void prepare_checkpoint(struct bulk_checkin_packfile *state,
+			       struct hashfile_checkpoint *checkpoint,
+			       struct pack_idx_entry *idx,
+			       unsigned flags)
+{
+	prepare_to_stream(state, flags);
+	if (idx) {
+		hashfile_checkpoint(state->f, checkpoint);
+		idx->offset = state->offset;
+		crc32_begin(state->f);
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -283,12 +296,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	already_hashed_to = 0;
 
 	while (1) {
-		prepare_to_stream(state, flags);
-		if (idx) {
-			hashfile_checkpoint(state->f, &checkpoint);
-			idx->offset = state->offset;
-			crc32_begin(state->f);
-		}
+		prepare_checkpoint(state, &checkpoint, idx, flags);
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 3/7] bulk-checkin: factor out `truncate_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor our the routine to
truncate a bulk-checkin packfile when writing past the pack size limit.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 27 +++++++++++++++++----------
 1 file changed, 17 insertions(+), 10 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 377c41f3ad..2dae8be461 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -273,6 +273,22 @@ static void prepare_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static void truncate_checkpoint(struct bulk_checkin_packfile *state,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx)
+{
+	/*
+	 * Writing this object to the current pack will make
+	 * it too big; we need to truncate it, start a new
+	 * pack, and write into it.
+	 */
+	if (!idx)
+		BUG("should not happen");
+	hashfile_truncate(state->f, checkpoint);
+	state->offset = checkpoint->offset;
+	flush_bulk_checkin_packfile(state);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -300,16 +316,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-		/*
-		 * Writing this object to the current pack will make
-		 * it too big; we need to truncate it, start a new
-		 * pack, and write into it.
-		 */
-		if (!idx)
-			BUG("should not happen");
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		flush_bulk_checkin_packfile(state);
+		truncate_checkpoint(state, &checkpoint, idx);
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 4/7] bulk-checkin: factor our `finalize_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor out the routine to
finalize the just-written object from the bulk-checkin mechanism.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 41 +++++++++++++++++++++++++----------------
 1 file changed, 25 insertions(+), 16 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 2dae8be461..a9497fcb28 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -289,6 +289,30 @@ static void truncate_checkpoint(struct bulk_checkin_packfile *state,
 	flush_bulk_checkin_packfile(state);
 }
 
+static void finalize_checkpoint(struct bulk_checkin_packfile *state,
+				git_hash_ctx *ctx,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx,
+				struct object_id *result_oid)
+{
+	the_hash_algo->final_oid_fn(result_oid, ctx);
+	if (!idx)
+		return;
+
+	idx->crc32 = crc32_end(state->f);
+	if (already_written(state, result_oid)) {
+		hashfile_truncate(state->f, checkpoint);
+		state->offset = checkpoint->offset;
+		free(idx);
+	} else {
+		oidcpy(&idx->oid, result_oid);
+		ALLOC_GROW(state->written,
+			   state->nr_written + 1,
+			   state->alloc_written);
+		state->written[state->nr_written++] = idx;
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -320,22 +344,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-	the_hash_algo->final_oid_fn(result_oid, &ctx);
-	if (!idx)
-		return 0;
-
-	idx->crc32 = crc32_end(state->f);
-	if (already_written(state, result_oid)) {
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		free(idx);
-	} else {
-		oidcpy(&idx->oid, result_oid);
-		ALLOC_GROW(state->written,
-			   state->nr_written + 1,
-			   state->alloc_written);
-		state->written[state->nr_written++] = idx;
-	}
+	finalize_checkpoint(state, &ctx, &checkpoint, idx, result_oid);
 	return 0;
 }
 
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 5/7] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Taylor Blau]

Now that we have factored out many of the common routines necessary to
index a new object into a pack created by the bulk-checkin machinery, we
can introduce a variant of `index_blob_bulk_checkin()` that acts on
blobs whose contents we can fit in memory.

This will be useful in a couple of more commits in order to provide the
`merge-tree` builtin with a mechanism to create a new pack containing
any objects it created during the merge, instead of storing those
objects individually as loose.

Similar to the existing `index_blob_bulk_checkin()` function, the
entrypoint delegates to `deflate_blob_to_pack_incore()`, which is
responsible for formatting the pack header and then deflating the
contents into the pack. The latter is accomplished by calling
deflate_blob_contents_to_pack_incore(), which takes advantage of the
earlier refactoring and is responsible for writing the object to the
pack and handling any overage from pack.packSizeLimit.

The bulk of the new functionality is implemented in the function
`stream_obj_to_pack_incore()`, which is a generic implementation for
writing objects of arbitrary type (whose contents we can fit in-core)
into a bulk-checkin pack.

The new function shares an unfortunate degree of similarity to the
existing `stream_blob_to_pack()` function. But DRY-ing up these two
would likely be more trouble than it's worth, since the latter has to
deal with reading and writing the contents of the object.

Consistent with the rest of the bulk-checkin mechanism, there are no
direct tests here. In future commits when we expose this new
functionality via the `merge-tree` builtin, we will test it indirectly
there.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 116 +++++++++++++++++++++++++++++++++++++++++++++++++
 bulk-checkin.h |   4 ++
 2 files changed, 120 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index a9497fcb28..319921efe7 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -140,6 +140,69 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
 	return 0;
 }
 
+static int stream_obj_to_pack_incore(struct bulk_checkin_packfile *state,
+				     git_hash_ctx *ctx,
+				     off_t *already_hashed_to,
+				     const void *buf, size_t size,
+				     enum object_type type,
+				     const char *path, unsigned flags)
+{
+	git_zstream s;
+	unsigned char obuf[16384];
+	unsigned hdrlen;
+	int status = Z_OK;
+	int write_object = (flags & HASH_WRITE_OBJECT);
+
+	git_deflate_init(&s, pack_compression_level);
+
+	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), type, size);
+	s.next_out = obuf + hdrlen;
+	s.avail_out = sizeof(obuf) - hdrlen;
+
+	if (*already_hashed_to < size) {
+		size_t hsize = size - *already_hashed_to;
+		if (hsize) {
+			the_hash_algo->update_fn(ctx, buf, hsize);
+		}
+		*already_hashed_to = size;
+	}
+	s.next_in = (void *)buf;
+	s.avail_in = size;
+
+	while (status != Z_STREAM_END) {
+		status = git_deflate(&s, Z_FINISH);
+		if (!s.avail_out || status == Z_STREAM_END) {
+			if (write_object) {
+				size_t written = s.next_out - obuf;
+
+				/* would we bust the size limit? */
+				if (state->nr_written &&
+				    pack_size_limit_cfg &&
+				    pack_size_limit_cfg < state->offset + written) {
+					git_deflate_abort(&s);
+					return -1;
+				}
+
+				hashwrite(state->f, obuf, written);
+				state->offset += written;
+			}
+			s.next_out = obuf;
+			s.avail_out = sizeof(obuf);
+		}
+
+		switch (status) {
+		case Z_OK:
+		case Z_BUF_ERROR:
+		case Z_STREAM_END:
+			continue;
+		default:
+			die("unexpected deflate failure: %d", status);
+		}
+	}
+	git_deflate_end(&s);
+	return 0;
+}
+
 /*
  * Read the contents from fd for size bytes, streaming it to the
  * packfile in state while updating the hash in ctx. Signal a failure
@@ -313,6 +376,48 @@ static void finalize_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
+					       git_hash_ctx *ctx,
+					       struct object_id *result_oid,
+					       const void *buf, size_t size,
+					       enum object_type type,
+					       const char *path, unsigned flags)
+{
+	struct hashfile_checkpoint checkpoint = {0};
+	struct pack_idx_entry *idx = NULL;
+	off_t already_hashed_to = 0;
+
+	/* Note: idx is non-NULL when we are writing */
+	if (flags & HASH_WRITE_OBJECT)
+		CALLOC_ARRAY(idx, 1);
+
+	while (1) {
+		prepare_checkpoint(state, &checkpoint, idx, flags);
+		if (!stream_obj_to_pack_incore(state, ctx, &already_hashed_to,
+					       buf, size, type, path, flags))
+			break;
+		truncate_checkpoint(state, &checkpoint, idx);
+	}
+
+	finalize_checkpoint(state, ctx, &checkpoint, idx, result_oid);
+
+	return 0;
+}
+
+static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+
+	format_object_header_hash(the_hash_algo, &ctx, OBJ_BLOB, size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, result_oid,
+						   buf, size, OBJ_BLOB, path,
+						   flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -392,6 +497,17 @@ int index_blob_bulk_checkin(struct object_id *oid,
 	return status;
 }
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_blob_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index aa7286a7b3..1b91daeaee 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -13,6 +13,10 @@ int index_blob_bulk_checkin(struct object_id *oid,
 			    int fd, size_t size,
 			    const char *path, unsigned flags);
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 6/7] bulk-checkin: introduce `index_tree_bulk_checkin_incore()`

[Taylor Blau]

The remaining missing piece in order to teach the `merge-tree` builtin
how to write the contents of a merge into a pack is a function to index
tree objects into a bulk-checkin pack.

This patch implements that missing piece, which is a thin wrapper around
all of the functionality introduced in previous commits.

If and when Git gains support for a "compatibility" hash algorithm, the
changes to support that here will be minimal. The bulk-checkin machinery
will need to convert the incoming tree to compute its length under the
compatibility hash, necessary to reconstruct its header. With that
information (and the converted contents of the tree), the bulk-checkin
machinery will have enough to keep track of the converted object's hash
in order to update the compatibility mapping.

Within `deflate_tree_to_pack_incore()`, the changes should be limited
to something like:

    if (the_repository->compat_hash_algo) {
      struct strbuf converted = STRBUF_INIT;
      if (convert_object_file(&compat_obj,
                              the_repository->hash_algo,
                              the_repository->compat_hash_algo, ...) < 0)
        die(...);

      format_object_header_hash(the_repository->compat_hash_algo,
                                OBJ_TREE, size);

      strbuf_release(&converted);
    }

, assuming related changes throughout the rest of the bulk-checkin
machinery necessary to update the hash of the converted object, which
are likewise minimal in size.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 25 +++++++++++++++++++++++++
 bulk-checkin.h |  4 ++++
 2 files changed, 29 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 319921efe7..d7d46f1dac 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -418,6 +418,20 @@ static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
 						   flags);
 }
 
+static int deflate_tree_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+
+	format_object_header_hash(the_hash_algo, &ctx, OBJ_TREE, size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, result_oid,
+						   buf, size, OBJ_TREE, path,
+						   flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -508,6 +522,17 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 	return status;
 }
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_tree_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index 1b91daeaee..89786b3954 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -17,6 +17,10 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 				   const void *buf, size_t size,
 				   const char *path, unsigned flags);
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.8.g7a7e1e881e.dirty

[PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

When using merge-tree often within a repository[^1], it is possible to
generate a relatively large number of loose objects, which can result in
degraded performance, and inode exhaustion in extreme cases.

Building on the functionality introduced in previous commits, the
bulk-checkin machinery now has support to write arbitrary blob and tree
objects which are small enough to be held in-core. We can use this to
write any blob/tree objects generated by ORT into a separate pack
instead of writing them out individually as loose.

This functionality is gated behind a new `--write-pack` option to
`merge-tree` that works with the (non-deprecated) `--write-tree` mode.

The implementation is relatively straightforward. There are two spots
within the ORT mechanism where we call `write_object_file()`, one for
content differences within blobs, and another to assemble any new trees
necessary to construct the merge. In each of those locations,
conditionally replace calls to `write_object_file()` with
`index_blob_bulk_checkin_incore()` or `index_tree_bulk_checkin_incore()`
depending on which kind of object we are writing.

The only remaining task is to begin and end the transaction necessary to
initialize the bulk-checkin machinery, and move any new pack(s) it
created into the main object store.

[^1]: Such is the case at GitHub, where we run presumptive "test merges"
  on open pull requests to see whether or not we can light up the merge
  button green depending on whether or not the presumptive merge was
  conflicted.

  This is done in response to a number of user-initiated events,
  including viewing an open pull request whose last test merge is stale
  with respect to the current base and tip of the pull request. As a
  result, merge-tree can be run very frequently on large, active
  repositories.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/git-merge-tree.txt |  4 ++
 builtin/merge-tree.c             |  5 ++
 merge-ort.c                      | 43 +++++++++++----
 merge-recursive.h                |  1 +
 t/t4301-merge-tree-write-tree.sh | 93 ++++++++++++++++++++++++++++++++
 5 files changed, 136 insertions(+), 10 deletions(-)

diff --git a/Documentation/git-merge-tree.txt b/Documentation/git-merge-tree.txt
index ffc4fbf7e8..9d37609ef1 100644
--- a/Documentation/git-merge-tree.txt
+++ b/Documentation/git-merge-tree.txt
@@ -69,6 +69,10 @@ OPTIONS
 	specify a merge-base for the merge, and specifying multiple bases is
 	currently not supported. This option is incompatible with `--stdin`.
 
+--write-pack::
+	Write any new objects into a separate packfile instead of as
+	individual loose objects.
+
 [[OUTPUT]]
 OUTPUT
 ------
diff --git a/builtin/merge-tree.c b/builtin/merge-tree.c
index 0de42aecf4..672ebd4c54 100644
--- a/builtin/merge-tree.c
+++ b/builtin/merge-tree.c
@@ -18,6 +18,7 @@
 #include "quote.h"
 #include "tree.h"
 #include "config.h"
+#include "bulk-checkin.h"
 
 static int line_termination = '\n';
 
@@ -414,6 +415,7 @@ struct merge_tree_options {
 	int show_messages;
 	int name_only;
 	int use_stdin;
+	int write_pack;
 };
 
 static int real_merge(struct merge_tree_options *o,
@@ -440,6 +442,7 @@ static int real_merge(struct merge_tree_options *o,
 	init_merge_options(&opt, the_repository);
 
 	opt.show_rename_progress = 0;
+	opt.write_pack = o->write_pack;
 
 	opt.branch1 = branch1;
 	opt.branch2 = branch2;
@@ -548,6 +551,8 @@ int cmd_merge_tree(int argc, const char **argv, const char *prefix)
 			   &merge_base,
 			   N_("commit"),
 			   N_("specify a merge-base for the merge")),
+		OPT_BOOL(0, "write-pack", &o.write_pack,
+			 N_("write new objects to a pack instead of as loose")),
 		OPT_END()
 	};
 
diff --git a/merge-ort.c b/merge-ort.c
index 8631c99700..85d8c5c6b3 100644
--- a/merge-ort.c
+++ b/merge-ort.c
@@ -48,6 +48,7 @@
 #include "tree.h"
 #include "unpack-trees.h"
 #include "xdiff-interface.h"
+#include "bulk-checkin.h"
 
 /*
  * We have many arrays of size 3.  Whenever we have such an array, the
@@ -2124,11 +2125,19 @@ static int handle_content_merge(struct merge_options *opt,
 		if ((merge_status < 0) || !result_buf.ptr)
 			ret = err(opt, _("Failed to execute internal merge"));
 
-		if (!ret &&
-		    write_object_file(result_buf.ptr, result_buf.size,
-				      OBJ_BLOB, &result->oid))
-			ret = err(opt, _("Unable to add %s to database"),
-				  path);
+		if (!ret) {
+			ret = opt->write_pack
+				? index_blob_bulk_checkin_incore(&result->oid,
+								 result_buf.ptr,
+								 result_buf.size,
+								 path, 1)
+				: write_object_file(result_buf.ptr,
+						    result_buf.size,
+						    OBJ_BLOB, &result->oid);
+			if (ret)
+				ret = err(opt, _("Unable to add %s to database"),
+					  path);
+		}
 
 		free(result_buf.ptr);
 		if (ret)
@@ -3618,7 +3627,8 @@ static int tree_entry_order(const void *a_, const void *b_)
 				 b->string, strlen(b->string), bmi->result.mode);
 }
 
-static int write_tree(struct object_id *result_oid,
+static int write_tree(struct merge_options *opt,
+		      struct object_id *result_oid,
 		      struct string_list *versions,
 		      unsigned int offset,
 		      size_t hash_size)
@@ -3652,8 +3662,14 @@ static int write_tree(struct object_id *result_oid,
 	}
 
 	/* Write this object file out, and record in result_oid */
-	if (write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid))
+	ret = opt->write_pack
+		? index_tree_bulk_checkin_incore(result_oid,
+						 buf.buf, buf.len, "", 1)
+		: write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid);
+
+	if (ret)
 		ret = -1;
+
 	strbuf_release(&buf);
 	return ret;
 }
@@ -3818,8 +3834,8 @@ static int write_completed_directory(struct merge_options *opt,
 		 */
 		dir_info->is_null = 0;
 		dir_info->result.mode = S_IFDIR;
-		if (write_tree(&dir_info->result.oid, &info->versions, offset,
-			       opt->repo->hash_algo->rawsz) < 0)
+		if (write_tree(opt, &dir_info->result.oid, &info->versions,
+			       offset, opt->repo->hash_algo->rawsz) < 0)
 			ret = -1;
 	}
 
@@ -4353,9 +4369,13 @@ static int process_entries(struct merge_options *opt,
 		fflush(stdout);
 		BUG("dir_metadata accounting completely off; shouldn't happen");
 	}
-	if (write_tree(result_oid, &dir_metadata.versions, 0,
+	if (write_tree(opt, result_oid, &dir_metadata.versions, 0,
 		       opt->repo->hash_algo->rawsz) < 0)
 		ret = -1;
+
+	if (opt->write_pack)
+		end_odb_transaction();
+
 cleanup:
 	string_list_clear(&plist, 0);
 	string_list_clear(&dir_metadata.versions, 0);
@@ -4899,6 +4919,9 @@ static void merge_start(struct merge_options *opt, struct merge_result *result)
 	 */
 	strmap_init(&opt->priv->conflicts);
 
+	if (opt->write_pack)
+		begin_odb_transaction();
+
 	trace2_region_leave("merge", "allocate/init", opt->repo);
 }
 
diff --git a/merge-recursive.h b/merge-recursive.h
index b88000e3c2..156e160876 100644
--- a/merge-recursive.h
+++ b/merge-recursive.h
@@ -48,6 +48,7 @@ struct merge_options {
 	unsigned renormalize : 1;
 	unsigned record_conflict_msgs_as_headers : 1;
 	const char *msg_header_prefix;
+	unsigned write_pack : 1;
 
 	/* internal fields used by the implementation */
 	struct merge_options_internal *priv;
diff --git a/t/t4301-merge-tree-write-tree.sh b/t/t4301-merge-tree-write-tree.sh
index 250f721795..2d81ff4de5 100755
--- a/t/t4301-merge-tree-write-tree.sh
+++ b/t/t4301-merge-tree-write-tree.sh
@@ -922,4 +922,97 @@ test_expect_success 'check the input format when --stdin is passed' '
 	test_cmp expect actual
 '
 
+packdir=".git/objects/pack"
+
+test_expect_success 'merge-tree can pack its result with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+
+	# base has lines [3, 4, 5]
+	#   - side adds to the beginning, resulting in [1, 2, 3, 4, 5]
+	#   - other adds to the end, resulting in [3, 4, 5, 6, 7]
+	#
+	# merging the two should result in a new blob object containing
+	# [1, 2, 3, 4, 5, 6, 7], along with a new tree.
+	test_commit -C repo base file "$(test_seq 3 5)" &&
+	git -C repo branch -M main &&
+	git -C repo checkout -b side main &&
+	test_commit -C repo side file "$(test_seq 1 5)" &&
+	git -C repo checkout -b other main &&
+	test_commit -C repo other file "$(test_seq 3 7)" &&
+
+	find repo/$packdir -type f -name "pack-*.idx" >packs.before &&
+	tree="$(git -C repo merge-tree --write-pack \
+		refs/tags/side refs/tags/other)" &&
+	blob="$(git -C repo rev-parse $tree:file)" &&
+	find repo/$packdir -type f -name "pack-*.idx" >packs.after &&
+
+	test_must_be_empty packs.before &&
+	test_line_count = 1 packs.after &&
+
+	git show-index <$(cat packs.after) >objects &&
+	test_line_count = 2 objects &&
+	grep "^[1-9][0-9]* $tree" objects &&
+	grep "^[1-9][0-9]* $blob" objects
+'
+
+test_expect_success 'merge-tree can write multiple packs with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+	(
+		cd repo &&
+
+		git config pack.packSizeLimit 512 &&
+
+		test_seq 512 >f &&
+
+		# "f" contains roughly ~2,000 bytes.
+		#
+		# Each side ("foo" and "bar") adds a small amount of data at the
+		# beginning and end of "base", respectively.
+		git add f &&
+		test_tick &&
+		git commit -m base &&
+		git branch -M main &&
+
+		git checkout -b foo main &&
+		{
+			echo foo && cat f
+		} >f.tmp &&
+		mv f.tmp f &&
+		git add f &&
+		test_tick &&
+		git commit -m foo &&
+
+		git checkout -b bar main &&
+		echo bar >>f &&
+		git add f &&
+		test_tick &&
+		git commit -m bar &&
+
+		find $packdir -type f -name "pack-*.idx" >packs.before &&
+		# Merging either side should result in a new object which is
+		# larger than 1M, thus the result should be split into two
+		# separate packs.
+		tree="$(git merge-tree --write-pack \
+			refs/heads/foo refs/heads/bar)" &&
+		blob="$(git rev-parse $tree:f)" &&
+		find $packdir -type f -name "pack-*.idx" >packs.after &&
+
+		test_must_be_empty packs.before &&
+		test_line_count = 2 packs.after &&
+		for idx in $(cat packs.after)
+		do
+			git show-index <$idx || return 1
+		done >objects &&
+
+		# The resulting set of packs should contain one copy of both
+		# objects, each in a separate pack.
+		test_line_count = 2 objects &&
+		grep "^[1-9][0-9]* $tree" objects &&
+		grep "^[1-9][0-9]* $blob" objects
+
+	)
+'
+
 test_done
-- 
2.42.0.8.g7a7e1e881e.dirty

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

> When using merge-tree often within a repository[^1], it is possible to
> generate a relatively large number of loose objects, which can result in
> degraded performance, and inode exhaustion in extreme cases.

Well, be it "git merge-tree" or "git merge", new loose objects tend
to accumulate until "gc" kicks in, so it is not a new problem for
mere mortals, is it?

As one "interesting" use case of "merge-tree" is for a Git hosting
site with bare repositories to offer trial merges, without which
majority of the object their repositories acquire would have been in
packs pushed by their users, "Gee, loose objects consume many inodes
in exchange for easier selective pruning" becomes an issue, right?

Just like it hurts performance to have too many loose object files,
presumably it would also hurt performance to keep too many packs,
each came from such a trial merge.  Do we have a "gc" story offered
for these packs created by the new feature?  E.g., "once merge-tree
is done creating a trial merge, we can discard the objects created
in the pack, because we never expose new objects in the pack to the
outside, processes running simultaneously, so instead closing the
new packfile by calling flush_bulk_checkin_packfile(), we can safely
unlink the temporary pack.  We do not even need to spend cycles to
run a gc that requires cycles to enumerate what is still reachable",
or something like that?

Thanks.

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

On Fri, Oct 06, 2023 at 03:35:25PM -0700, Junio C Hamano wrote:
> Taylor Blau <me@ttaylorr.com> writes:
>
> > When using merge-tree often within a repository[^1], it is possible to
> > generate a relatively large number of loose objects, which can result in
> > degraded performance, and inode exhaustion in extreme cases.
>
> Well, be it "git merge-tree" or "git merge", new loose objects tend
> to accumulate until "gc" kicks in, so it is not a new problem for
> mere mortals, is it?

Yeah, I would definitely suspect that this is more of an issue for
forges than individual Git users.

> As one "interesting" use case of "merge-tree" is for a Git hosting
> site with bare repositories to offer trial merges, without which
> majority of the object their repositories acquire would have been in
> packs pushed by their users, "Gee, loose objects consume many inodes
> in exchange for easier selective pruning" becomes an issue, right?

Right.

> Just like it hurts performance to have too many loose object files,
> presumably it would also hurt performance to keep too many packs,
> each came from such a trial merge.  Do we have a "gc" story offered
> for these packs created by the new feature?  E.g., "once merge-tree
> is done creating a trial merge, we can discard the objects created
> in the pack, because we never expose new objects in the pack to the
> outside, processes running simultaneously, so instead closing the
> new packfile by calling flush_bulk_checkin_packfile(), we can safely
> unlink the temporary pack.  We do not even need to spend cycles to
> run a gc that requires cycles to enumerate what is still reachable",
> or something like that?

I know Johannes worked on something like this recently. IIRC, it
effectively does something like:

    struct tmp_objdir *tmp_objdir = tmp_objdir_create(...);
    tmp_objdir_replace_primary_odb(tmp_objdir, 1);

at the beginning of a merge operation, and:

    tmp_objdir_discard_objects(tmp_objdir);

at the end. I haven't followed that work off-list very closely, but it
is only possible for GitHub to discard certain niche kinds of
merges/rebases, since in general we make the objects created during test
merges available via refs/pull/N/{merge,rebase}.

I think that like anything, this is a trade-off. Having lots of packs
can be a performance hindrance just like having lots of loose objects.
But since we can represent more objects with fewer inodes when packed,
storing those objects together in a pack is preferable when (a) you're
doing lots of test-merges, and (b) you want to keep those objects
around, e.g., because they are reachable.

Thanks,
Taylor

Re: [PATCH 6/7] bulk-checkin: introduce `index_tree_bulk_checkin_incore()`

[Eric Biederman]

On October 6, 2023 5:02:04 PM CDT, Taylor Blau <me@ttaylorr.com> wrote:
>
>Within `deflate_tree_to_pack_incore()`, the changes should be limited
>to something like:
>
>    if (the_repository->compat_hash_algo) {
>      struct strbuf converted = STRBUF_INIT;
>      if (convert_object_file(&compat_obj,
>                              the_repository->hash_algo,
>                              the_repository->compat_hash_algo, ...) < 0)
>        die(...);
>
>      format_object_header_hash(the_repository->compat_hash_algo,
>                                OBJ_TREE, size);
>
>      strbuf_release(&converted);
>    }
>
>, assuming related changes throughout the rest of the bulk-checkin
>machinery necessary to update the hash of the converted object, which
>are likewise minimal in size.

So this is close.   Just in case someone wants to
go down this path I want to point out that
the converted object need to have the compat hash computed over it.

Which means that the strbuf_release in your example comes a bit early.


Eric

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Elijah Newren]

On Fri, Oct 6, 2023 at 4:02 PM Taylor Blau <me@ttaylorr.com> wrote:
>
> On Fri, Oct 06, 2023 at 03:35:25PM -0700, Junio C Hamano wrote:
> > Taylor Blau <me@ttaylorr.com> writes:
> >
> > > When using merge-tree often within a repository[^1], it is possible to
> > > generate a relatively large number of loose objects, which can result in
> > > degraded performance, and inode exhaustion in extreme cases.
> >
> > Well, be it "git merge-tree" or "git merge", new loose objects tend
> > to accumulate until "gc" kicks in, so it is not a new problem for
> > mere mortals, is it?
>
> Yeah, I would definitely suspect that this is more of an issue for
> forges than individual Git users.

It may still be nice to also do this optimization for plain "git
merge" as well.  I had it in my list of ideas somewhere to do a
"fast-import-like" thing to avoid writing loose objects, as I
suspected that'd actually be a performance impediment.

> > As one "interesting" use case of "merge-tree" is for a Git hosting
> > site with bare repositories to offer trial merges, without which
> > majority of the object their repositories acquire would have been in
> > packs pushed by their users, "Gee, loose objects consume many inodes
> > in exchange for easier selective pruning" becomes an issue, right?
>
> Right.
>
> > Just like it hurts performance to have too many loose object files,
> > presumably it would also hurt performance to keep too many packs,
> > each came from such a trial merge.  Do we have a "gc" story offered
> > for these packs created by the new feature?  E.g., "once merge-tree
> > is done creating a trial merge, we can discard the objects created
> > in the pack, because we never expose new objects in the pack to the
> > outside, processes running simultaneously, so instead closing the
> > new packfile by calling flush_bulk_checkin_packfile(), we can safely
> > unlink the temporary pack.  We do not even need to spend cycles to
> > run a gc that requires cycles to enumerate what is still reachable",
> > or something like that?
>
> I know Johannes worked on something like this recently. IIRC, it
> effectively does something like:
>
>     struct tmp_objdir *tmp_objdir = tmp_objdir_create(...);
>     tmp_objdir_replace_primary_odb(tmp_objdir, 1);
>
> at the beginning of a merge operation, and:
>
>     tmp_objdir_discard_objects(tmp_objdir);
>
> at the end. I haven't followed that work off-list very closely, but it
> is only possible for GitHub to discard certain niche kinds of
> merges/rebases, since in general we make the objects created during test
> merges available via refs/pull/N/{merge,rebase}.

Oh, at the contributor summit, Johannes said he only needed pass/fail,
not the actual commits, which is why I suggested this route.  If you
need to keep the actual commits, then this won't help.

I was interested in the same question as Junio, but from a different
angle.  fast-import documentation points out that the packs it creates
are suboptimal with poorer delta choices.  Are the packs created by
bulk-checkin prone to the same issues?  When I was thinking in terms
of having "git merge" use fast-import for pack creation instead of
writing loose objects (an idea I never investigated very far), I was
wondering if I'd need to mark those packs as "less optimal" and do
something to make sure they were more likely to be repacked.

I believe geometric repacking didn't exist back when I was thinking
about this, and perhaps geometric repacking automatically handles
things nicely for us.  Does it, or are we risking retaining
sub-optimal deltas from the bulk-checkin code?

(I've never really cracked open the pack code, so I have absolutely no
idea; I'm just curious.)

> I think that like anything, this is a trade-off. Having lots of packs
> can be a performance hindrance just like having lots of loose objects.
> But since we can represent more objects with fewer inodes when packed,
> storing those objects together in a pack is preferable when (a) you're
> doing lots of test-merges, and (b) you want to keep those objects
> around, e.g., because they are reachable.

A couple of the comments earlier in the series suggested this was
about streaming blobs to a pack in the bulk checkin code.  Are tree
and commit objects also put in the pack, or will those continue to be
written loosely?

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

On Sun, Oct 08, 2023 at 12:02:27AM -0700, Elijah Newren wrote:
> On Fri, Oct 6, 2023 at 4:02 PM Taylor Blau <me@ttaylorr.com> wrote:
> >
> > On Fri, Oct 06, 2023 at 03:35:25PM -0700, Junio C Hamano wrote:
> > > Taylor Blau <me@ttaylorr.com> writes:
> > >
> > > > When using merge-tree often within a repository[^1], it is possible to
> > > > generate a relatively large number of loose objects, which can result in
> > > > degraded performance, and inode exhaustion in extreme cases.
> > >
> > > Well, be it "git merge-tree" or "git merge", new loose objects tend
> > > to accumulate until "gc" kicks in, so it is not a new problem for
> > > mere mortals, is it?
> >
> > Yeah, I would definitely suspect that this is more of an issue for
> > forges than individual Git users.
>
> It may still be nice to also do this optimization for plain "git
> merge" as well.  I had it in my list of ideas somewhere to do a
> "fast-import-like" thing to avoid writing loose objects, as I
> suspected that'd actually be a performance impediment.

I think that would be worth doing, definitely. I do worry a little bit
about locking in low-quality deltas (or lack thereof), but more on that
below...

> Oh, at the contributor summit, Johannes said he only needed pass/fail,
> not the actual commits, which is why I suggested this route.  If you
> need to keep the actual commits, then this won't help.

Yep, agreed. Like I said earlier, I think there are some niche scenarios
where we just care about "would this merge cleanly?", but in most other
cases we want to keep around the actual tree.

> I was interested in the same question as Junio, but from a different
> angle.  fast-import documentation points out that the packs it creates
> are suboptimal with poorer delta choices.  Are the packs created by
> bulk-checkin prone to the same issues?  When I was thinking in terms
> of having "git merge" use fast-import for pack creation instead of
> writing loose objects (an idea I never investigated very far), I was
> wondering if I'd need to mark those packs as "less optimal" and do
> something to make sure they were more likely to be repacked.
>
> I believe geometric repacking didn't exist back when I was thinking
> about this, and perhaps geometric repacking automatically handles
> things nicely for us.  Does it, or are we risking retaining
> sub-optimal deltas from the bulk-checkin code?
>
> (I've never really cracked open the pack code, so I have absolutely no
> idea; I'm just curious.)

Yes, the bulk-checkin mechanism suffers from an even worse problem which
is the pack it creates will contain no deltas whatsoever. The contents
of the pack are just getting written as-is, so there's no fancy
delta-ficiation going on.

I think Michael Haggerty (?) suggested to me off-list that it might be
interesting to have a flag that we could mark packs with bad/no deltas
as such so that we don't implicitly trust their contents as having high
quality deltas.

> > I think that like anything, this is a trade-off. Having lots of packs
> > can be a performance hindrance just like having lots of loose objects.
> > But since we can represent more objects with fewer inodes when packed,
> > storing those objects together in a pack is preferable when (a) you're
> > doing lots of test-merges, and (b) you want to keep those objects
> > around, e.g., because they are reachable.
>
> A couple of the comments earlier in the series suggested this was
> about streaming blobs to a pack in the bulk checkin code.  Are tree
> and commit objects also put in the pack, or will those continue to be
> written loosely?

This covers both blobs and trees, since IIUC that's all we'd need to
implement support for merge-tree to be able to write any objects it
creates into a pack. AFAIK merge-tree never generates any commit
objects. But teaching 'merge' to perform the same bulk-checkin trick
would just require us implementing index_bulk_commit_checkin_in_core()
or similar, which is straightforward to do on top of the existing code.

Thanks,
Taylor

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Jeff King]

On Sun, Oct 08, 2023 at 12:04:04PM -0400, Taylor Blau wrote:

> > I was interested in the same question as Junio, but from a different
> > angle.  fast-import documentation points out that the packs it creates
> > are suboptimal with poorer delta choices.  Are the packs created by
> > bulk-checkin prone to the same issues?  When I was thinking in terms
> > of having "git merge" use fast-import for pack creation instead of
> > writing loose objects (an idea I never investigated very far), I was
> > wondering if I'd need to mark those packs as "less optimal" and do
> > something to make sure they were more likely to be repacked.
> >
> > I believe geometric repacking didn't exist back when I was thinking
> > about this, and perhaps geometric repacking automatically handles
> > things nicely for us.  Does it, or are we risking retaining
> > sub-optimal deltas from the bulk-checkin code?
> >
> > (I've never really cracked open the pack code, so I have absolutely no
> > idea; I'm just curious.)
> 
> Yes, the bulk-checkin mechanism suffers from an even worse problem which
> is the pack it creates will contain no deltas whatsoever. The contents
> of the pack are just getting written as-is, so there's no fancy
> delta-ficiation going on.

I wonder how big a deal this would be in practice for merges.
pack-objects will look for deltas between any two candidates objects,
but in practice I think most deltas are between objects from multiple
commits (across the "time" dimension, if you will) rather than within a
single tree (the "space" dimension). And a merge operation is generally
creating a single new tree (recursive merging may create intermediate
states which would delta, but we don't actually need to keep those
intermediate ones. I won't be surprised if we do, though).

We should be able to test that theory by looking at existing deltas.
Here's a script which builds an index of blobs and trees to the commits
that introduce them:

  git rev-list HEAD |
  git diff-tree --stdin -r -m -t --raw |
  perl -lne '
    if (/^[0-9a-f]/) {
      $commit = $_;
    } elsif (/^:\S+ \S+ \S+ (\S+)/) {
      $h{$1} = $commit;
    }
    END { print "$_ $h{$_}" for keys(%h) }
  ' >commits.db

And then we can see which deltas come from the same commit:

  git cat-file --batch-all-objects --batch-check='%(objectname) %(deltabase)' |
  perl -alne '
    BEGIN {
      open(my $fh, "<", "commits.db");
      %commit = map { chomp; split } <$fh>;
    }
    next if $F[1] =~ /0{40}/; # not a delta
    next unless defined $commit{$F[0]}; # not in index
    print $commit{$F[0]} eq $commit{$F[1]} ? "inner" : "outer", " ", $_;
  '

In git.git, I see 460 "inner" deltas, and 193,081 "outer" ones. The
inner ones are mostly small single-file test vectors, which makes sense.
It's possible to have a merge result that does conflict resolution in
two such files (that would then delta), but it seems like a fairly
unlikely case. Numbers for linux.git are similar.

So it might just not be a big issue at all for this use case.

> I think Michael Haggerty (?) suggested to me off-list that it might be
> interesting to have a flag that we could mark packs with bad/no deltas
> as such so that we don't implicitly trust their contents as having high
> quality deltas.

I was going to suggest the same thing. ;) Unfortunately it's a bit
tricky to do as we have no room in the file format for an optional flag.
You'd have to add a ".mediocre-delta" file or something.

But here's another approach. I recall discussing a while back the idea
that we should not necessarily trust the quality of deltas in packs that
are pushed (and I think Thomas Gummerer even did some experiments inside
GitHub with those, though I don't remember the results). And one way
around that is during geometric repacking to consider the biggest/oldest
pack as "preferred", reuse its deltas, but always compute from scratch
with the others (neither reusing on-disk deltas, nor skipping
try_delta() when two objects come from the same pack).

That same strategy would work here (and for incremental fast-import
packs, though of course not if your fast-import pack is the "big" one
after you do a from-scratch import).

> > A couple of the comments earlier in the series suggested this was
> > about streaming blobs to a pack in the bulk checkin code.  Are tree
> > and commit objects also put in the pack, or will those continue to be
> > written loosely?
> 
> This covers both blobs and trees, since IIUC that's all we'd need to
> implement support for merge-tree to be able to write any objects it
> creates into a pack. AFAIK merge-tree never generates any commit
> objects. But teaching 'merge' to perform the same bulk-checkin trick
> would just require us implementing index_bulk_commit_checkin_in_core()
> or similar, which is straightforward to do on top of the existing code.

This is a bit of a devil's advocate question, but: would it make sense
to implement this as a general of Git's object-writing code, and not tie
it to a specific command? That is, what if a user could do:

  git --write-to-pack merge ...

but also:

  git --write-to-pack add ...

and the object-writing code would just write to a pack instead of
writing loose objects. That lets the caller decide when it is or is not
a good idea to use this mode. And if making loose objects gives bad
performance for merges, wouldn't the same be true of other operations
which generate many objects?

Possibly it exacerbates the "no deltas" issue from above (though it
would depend on the command).  The bigger question to me is one of
checkpointing. When do we finish off the pack with a .idx and make it
available to other readers? We could do it at program exit, but I
suspect there are some commands that really want to make objects
available sooner (e.g., as soon as "git add" writes an index, we'd want
those objects to already be available). Probably every program that
writes objects would need to be annotated with a checkpoint call (which
would be a noop in loose object mode).

So maybe it's a dumb direction. I dunno.

-Peff

Re: [PATCH 6/7] bulk-checkin: introduce `index_tree_bulk_checkin_incore()`

[Taylor Blau]

On Fri, Oct 06, 2023 at 10:07:20PM -0500, Eric Biederman wrote:
> On October 6, 2023 5:02:04 PM CDT, Taylor Blau <me@ttaylorr.com> wrote:
> >Within `deflate_tree_to_pack_incore()`, the changes should be limited
> >to something like:
> >
> >    if (the_repository->compat_hash_algo) {
> >      struct strbuf converted = STRBUF_INIT;
> >      if (convert_object_file(&compat_obj,
> >                              the_repository->hash_algo,
> >                              the_repository->compat_hash_algo, ...) < 0)
> >        die(...);
> >
> >      format_object_header_hash(the_repository->compat_hash_algo,
> >                                OBJ_TREE, size);
> >
> >      strbuf_release(&converted);
> >    }
> >
> >, assuming related changes throughout the rest of the bulk-checkin
> >machinery necessary to update the hash of the converted object, which
> >are likewise minimal in size.
>
> So this is close.   Just in case someone wants to
> go down this path I want to point out that
> the converted object need to have the compat hash computed over it.
>
> Which means that the strbuf_release in your example comes a bit early.

Doh. You're absolutely right. Let's fix this if/when we cross that
bridge ;-).

Thanks,
Taylor

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

On Sun, Oct 08, 2023 at 01:33:29PM -0400, Jeff King wrote:
> On Sun, Oct 08, 2023 at 12:04:04PM -0400, Taylor Blau wrote:
>
> > > I was interested in the same question as Junio, but from a different
> > > angle.  fast-import documentation points out that the packs it creates
> > > are suboptimal with poorer delta choices.  Are the packs created by
> > > bulk-checkin prone to the same issues?  When I was thinking in terms
> > > of having "git merge" use fast-import for pack creation instead of
> > > writing loose objects (an idea I never investigated very far), I was
> > > wondering if I'd need to mark those packs as "less optimal" and do
> > > something to make sure they were more likely to be repacked.
> > >
> > > I believe geometric repacking didn't exist back when I was thinking
> > > about this, and perhaps geometric repacking automatically handles
> > > things nicely for us.  Does it, or are we risking retaining
> > > sub-optimal deltas from the bulk-checkin code?
> > >
> > > (I've never really cracked open the pack code, so I have absolutely no
> > > idea; I'm just curious.)
> >
> > Yes, the bulk-checkin mechanism suffers from an even worse problem which
> > is the pack it creates will contain no deltas whatsoever. The contents
> > of the pack are just getting written as-is, so there's no fancy
> > delta-ficiation going on.
>
> I wonder how big a deal this would be in practice for merges.
> pack-objects will look for deltas between any two candidates objects,
> but in practice I think most deltas are between objects from multiple
> commits (across the "time" dimension, if you will) rather than within a
> single tree (the "space" dimension). And a merge operation is generally
> creating a single new tree (recursive merging may create intermediate
> states which would delta, but we don't actually need to keep those
> intermediate ones. I won't be surprised if we do, though).
>
> We should be able to test that theory by looking at existing deltas.
> Here's a script which builds an index of blobs and trees to the commits
> that introduce them:
>
>   git rev-list HEAD |
>   git diff-tree --stdin -r -m -t --raw |
>   perl -lne '
>     if (/^[0-9a-f]/) {
>       $commit = $_;
>     } elsif (/^:\S+ \S+ \S+ (\S+)/) {
>       $h{$1} = $commit;
>     }
>     END { print "$_ $h{$_}" for keys(%h) }
>   ' >commits.db
>
> And then we can see which deltas come from the same commit:
>
>   git cat-file --batch-all-objects --batch-check='%(objectname) %(deltabase)' |
>   perl -alne '
>     BEGIN {
>       open(my $fh, "<", "commits.db");
>       %commit = map { chomp; split } <$fh>;
>     }
>     next if $F[1] =~ /0{40}/; # not a delta
>     next unless defined $commit{$F[0]}; # not in index
>     print $commit{$F[0]} eq $commit{$F[1]} ? "inner" : "outer", " ", $_;
>   '
>
> In git.git, I see 460 "inner" deltas, and 193,081 "outer" ones. The
> inner ones are mostly small single-file test vectors, which makes sense.
> It's possible to have a merge result that does conflict resolution in
> two such files (that would then delta), but it seems like a fairly
> unlikely case. Numbers for linux.git are similar.
>
> So it might just not be a big issue at all for this use case.

Very interesting, thanks for running (and documenting!) this experiment.
I'm mostly with you that it probably doesn't make a huge difference in
practice here.

One thing that I'm not entirely clear on is how we'd treat objects that
could be good delta candidates for each other between two packs. For
instance, if I write a tree corresponding to the merge between two
branches, it's likely that the resulting tree would be a good delta
candidate against either of the trees at the tips of those two refs.

But we won't pack those trees (the ones at the tips of the refs) in the
same pack as the tree containing their merge. If we later on tried to
repack, would we evaluate the tip trees as possible delta candidates
against the merged tree? Or would we look at the merged tree, realize it
isn't delta'd with anything, and then not attempt to find any
candidates?

> > I think Michael Haggerty (?) suggested to me off-list that it might be
> > interesting to have a flag that we could mark packs with bad/no deltas
> > as such so that we don't implicitly trust their contents as having high
> > quality deltas.
>
> I was going to suggest the same thing. ;) Unfortunately it's a bit
> tricky to do as we have no room in the file format for an optional flag.
> You'd have to add a ".mediocre-delta" file or something.

Yeah, I figured that we'd add a new ".baddeltas" file or something. (As
an aside, we probably should have an optional flags section in the .pack
format, since we seem to have a lot of optional pack extensions: .rev,
.bitmap, .keep, .promisor, etc.)

> But here's another approach. I recall discussing a while back the idea
> that we should not necessarily trust the quality of deltas in packs that
> are pushed (and I think Thomas Gummerer even did some experiments inside
> GitHub with those, though I don't remember the results). And one way
> around that is during geometric repacking to consider the biggest/oldest
> pack as "preferred", reuse its deltas, but always compute from scratch
> with the others (neither reusing on-disk deltas, nor skipping
> try_delta() when two objects come from the same pack).
>
> That same strategy would work here (and for incremental fast-import
> packs, though of course not if your fast-import pack is the "big" one
> after you do a from-scratch import).

Yeah, definitely. I think that that code is still living in GitHub's
fork, but inactive since we haven't set any of the relevant
configuration in GitHub's production environment.

> Possibly it exacerbates the "no deltas" issue from above (though it
> would depend on the command).  The bigger question to me is one of
> checkpointing. When do we finish off the pack with a .idx and make it
> available to other readers? We could do it at program exit, but I
> suspect there are some commands that really want to make objects
> available sooner (e.g., as soon as "git add" writes an index, we'd want
> those objects to already be available). Probably every program that
> writes objects would need to be annotated with a checkpoint call (which
> would be a noop in loose object mode).
>
> So maybe it's a dumb direction. I dunno.

I wouldn't say it's a dumb direction ;-). But I'd be hesitant pursuing
it without solving the "no deltas" question from earlier.

Thanks,
Taylor

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Patrick Steinhardt]

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On Fri, Oct 06, 2023 at 07:02:05PM -0400, Taylor Blau wrote:
> On Fri, Oct 06, 2023 at 03:35:25PM -0700, Junio C Hamano wrote:
> > Taylor Blau <me@ttaylorr.com> writes:
> >
> > > When using merge-tree often within a repository[^1], it is possible to
> > > generate a relatively large number of loose objects, which can result in
> > > degraded performance, and inode exhaustion in extreme cases.
> >
> > Well, be it "git merge-tree" or "git merge", new loose objects tend
> > to accumulate until "gc" kicks in, so it is not a new problem for
> > mere mortals, is it?
> 
> Yeah, I would definitely suspect that this is more of an issue for
> forges than individual Git users.
> 
> > As one "interesting" use case of "merge-tree" is for a Git hosting
> > site with bare repositories to offer trial merges, without which
> > majority of the object their repositories acquire would have been in
> > packs pushed by their users, "Gee, loose objects consume many inodes
> > in exchange for easier selective pruning" becomes an issue, right?
> 
> Right.
> 
> > Just like it hurts performance to have too many loose object files,
> > presumably it would also hurt performance to keep too many packs,
> > each came from such a trial merge.  Do we have a "gc" story offered
> > for these packs created by the new feature?  E.g., "once merge-tree
> > is done creating a trial merge, we can discard the objects created
> > in the pack, because we never expose new objects in the pack to the
> > outside, processes running simultaneously, so instead closing the
> > new packfile by calling flush_bulk_checkin_packfile(), we can safely
> > unlink the temporary pack.  We do not even need to spend cycles to
> > run a gc that requires cycles to enumerate what is still reachable",
> > or something like that?
> 
> I know Johannes worked on something like this recently. IIRC, it
> effectively does something like:
> 
>     struct tmp_objdir *tmp_objdir = tmp_objdir_create(...);
>     tmp_objdir_replace_primary_odb(tmp_objdir, 1);
> 
> at the beginning of a merge operation, and:
> 
>     tmp_objdir_discard_objects(tmp_objdir);
> 
> at the end. I haven't followed that work off-list very closely, but it
> is only possible for GitHub to discard certain niche kinds of
> merges/rebases, since in general we make the objects created during test
> merges available via refs/pull/N/{merge,rebase}.
> 
> I think that like anything, this is a trade-off. Having lots of packs
> can be a performance hindrance just like having lots of loose objects.
> But since we can represent more objects with fewer inodes when packed,
> storing those objects together in a pack is preferable when (a) you're
> doing lots of test-merges, and (b) you want to keep those objects
> around, e.g., because they are reachable.

In Gitaly, we usually set up quarantine directories for all operations
that create objects. This allows us to discard any newly written objects
in case either the RPC call gets cancelled or in case our access checks
determine that the change should not be allowed. The logic is rather
simple:

    1. Create a new temporary directory.

    2. Set up the new temporary directory as main object database via
       the `GIT_OBJECT_DIRECTORY` environment variable.

    3. Set up the main repository's object database via the
       `GIT_ALTERNATE_OBJECT_DIRECTORIES` environment variable.

    4. Execute Git commands that write objects with these environment
       variables set up. The new objects will end up neatly contained in
       the temporary directory.

    5. Once done, either discard the temporary object database or
       migrate objects into the main object daatabase.

I wonder whether this would be a viable approach for you, as well.

Patrick

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Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

On Mon, Oct 09, 2023 at 12:54:12PM +0200, Patrick Steinhardt wrote:
> In Gitaly, we usually set up quarantine directories for all operations
> that create objects. This allows us to discard any newly written objects
> in case either the RPC call gets cancelled or in case our access checks
> determine that the change should not be allowed. The logic is rather
> simple:
>
>     1. Create a new temporary directory.
>
>     2. Set up the new temporary directory as main object database via
>        the `GIT_OBJECT_DIRECTORY` environment variable.
>
>     3. Set up the main repository's object database via the
>        `GIT_ALTERNATE_OBJECT_DIRECTORIES` environment variable.

Is there a reason not to run Git in the quarantine environment and list
the main repository as an alternate via $GIT_DIR/objects/info/alternates
instead of the GIT_ALTERNATE_OBJECT_DIRECTORIES environment variable?

>     4. Execute Git commands that write objects with these environment
>        variables set up. The new objects will end up neatly contained in
>        the temporary directory.
>
>     5. Once done, either discard the temporary object database or
>        migrate objects into the main object daatabase.

Interesting. I'm curious why you don't use the builtin tmp_objdir
mechanism in Git itself. Do you need to run more than one command in the
quarantine environment? If so, that makes sense that you'd want to have
a scratch repository that lasts beyond the lifetime of a single process.

> I wonder whether this would be a viable approach for you, as well.

I think that the main problem that we are trying to solve with this
series is creating a potentially large number of loose objects. I think
that you could do something like what you propose above, with a 'git
repacks -adk' before moving its objects over back to the main repository.

But since we're working in a single process only when doing a merge-tree
operation, I think it is probably more expedient to write the pack's
bytes directly.

> Patrick


Thanks,
Taylor

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Junio C Hamano]

Jeff King <peff@peff.net> writes:

>> Yes, the bulk-checkin mechanism suffers from an even worse problem which
>> is the pack it creates will contain no deltas whatsoever. The contents
>> of the pack are just getting written as-is, so there's no fancy
>> delta-ficiation going on.
>
> I wonder how big a deal this would be in practice for merges.
> ...

Thanks for your experiments ;-)

The reason why bulk-checkin mechanism does not attempt deltifying
(as opposed to fast-import that attempts to deltify with the
immediately previous object and only with that single object) is
exactly the same.  It was done to support the initial check-in,
which by definition lacks the delta opportunity along the time axis.

As you describe, such a delta-less pack would risk missed
deltification opportunity when running a repack (without "-f"), as
the opposite of the well known "reuse delta" heuristics, aka "this
object was stored in the base form, it is likely that the previous
pack-object tried but did not find a good delta base for it, let's
not waste time retrying that" heuristics would get in the way.

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Jeff King]

On Sun, Oct 08, 2023 at 09:37:42PM -0400, Taylor Blau wrote:

> Very interesting, thanks for running (and documenting!) this experiment.
> I'm mostly with you that it probably doesn't make a huge difference in
> practice here.
> 
> One thing that I'm not entirely clear on is how we'd treat objects that
> could be good delta candidates for each other between two packs. For
> instance, if I write a tree corresponding to the merge between two
> branches, it's likely that the resulting tree would be a good delta
> candidate against either of the trees at the tips of those two refs.
> 
> But we won't pack those trees (the ones at the tips of the refs) in the
> same pack as the tree containing their merge. If we later on tried to
> repack, would we evaluate the tip trees as possible delta candidates
> against the merged tree? Or would we look at the merged tree, realize it
> isn't delta'd with anything, and then not attempt to find any
> candidates?

When we repack (either all-into-one, or in a geometric roll-up), we
should consider those trees as candidates. The only deltas we don't
consider are:

  - if something is already a delta in a pack, then we will usually
    reuse that delta verbatim (so you might get fooled by a mediocre
    delta and not go to the trouble to search again. But I don't think
    that applies here; there is no other tree in your new pack to make
    such a mediocre delta from, and anyway you are skipping deltas
    entirely)

  - if two objects are in the same pack but there's no delta
    relationship, the try_delta() heuristics will skip them immediately
    (under the assumption that we tried during the last repack and
    didn't find anything good).

So yes, if you had a big old pack with the original trees, and then a
new pack with the merge result, we should try to delta the new merge
result tree against the others, just as we would if it were loose.

> > I was going to suggest the same thing. ;) Unfortunately it's a bit
> > tricky to do as we have no room in the file format for an optional flag.
> > You'd have to add a ".mediocre-delta" file or something.
> 
> Yeah, I figured that we'd add a new ".baddeltas" file or something. (As
> an aside, we probably should have an optional flags section in the .pack
> format, since we seem to have a lot of optional pack extensions: .rev,
> .bitmap, .keep, .promisor, etc.)

Yes, though since packv2 is the on-the-wire format, it's very hard to
change now. It might be easier to put an annotation into the .idx file.

-Peff

Re: [PATCH 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Patrick Steinhardt]

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On Mon, Oct 09, 2023 at 12:08:32PM -0400, Taylor Blau wrote:
> On Mon, Oct 09, 2023 at 12:54:12PM +0200, Patrick Steinhardt wrote:
> > In Gitaly, we usually set up quarantine directories for all operations
> > that create objects. This allows us to discard any newly written objects
> > in case either the RPC call gets cancelled or in case our access checks
> > determine that the change should not be allowed. The logic is rather
> > simple:
> >
> >     1. Create a new temporary directory.
> >
> >     2. Set up the new temporary directory as main object database via
> >        the `GIT_OBJECT_DIRECTORY` environment variable.
> >
> >     3. Set up the main repository's object database via the
> >        `GIT_ALTERNATE_OBJECT_DIRECTORIES` environment variable.
> 
> Is there a reason not to run Git in the quarantine environment and list
> the main repository as an alternate via $GIT_DIR/objects/info/alternates
> instead of the GIT_ALTERNATE_OBJECT_DIRECTORIES environment variable?

The quarantine environment as we use it is really only a single object
database, so you cannot run Git inside of it directly.

> >     4. Execute Git commands that write objects with these environment
> >        variables set up. The new objects will end up neatly contained in
> >        the temporary directory.
> >
> >     5. Once done, either discard the temporary object database or
> >        migrate objects into the main object daatabase.
> 
> Interesting. I'm curious why you don't use the builtin tmp_objdir
> mechanism in Git itself. Do you need to run more than one command in the
> quarantine environment? If so, that makes sense that you'd want to have
> a scratch repository that lasts beyond the lifetime of a single process.

It's a mixture of things:

    - Many commands simply don't set up a temporary object directory.

    - We want to check the result after the objects have been generated.
      Many of the commands don't provide hooks to do so in a reasonable
      way. So we want to check the result _after_ the command has exited
      already, and objects should not yet have been migrated into the
      target object database at that point.

    - Sometimes we indeed want to run multiple Git commands. We use this
      e.g. for worktreeless rebases, where we run a succession of
      commands to rebase every single commit.

So ultimately, our own quarantine directory sits at a conceptually
higher level than what Git commands would be able to provide.

> > I wonder whether this would be a viable approach for you, as well.
> 
> I think that the main problem that we are trying to solve with this
> series is creating a potentially large number of loose objects. I think
> that you could do something like what you propose above, with a 'git
> repacks -adk' before moving its objects over back to the main repository.

Yeah, that's certainly possible. I had the feeling that there are two
different problems that we're trying to solve in this thread:

    - The problem that the objects are of temporary nature. Regardless
      of whether they are in a packfile or loose, it doesn't make much
      sense to put them into the main object database as they would be
      unreachable anyway and thus get pruned after some time.

    - The problem that writing many loose objects can be slow.

My proposal only addresses the first problem.

> But since we're working in a single process only when doing a merge-tree
> operation, I think it is probably more expedient to write the pack's
> bytes directly.

If it's about efficiency and not about how we discard those objects
after the command has ran to completion then yes, I agree.

Patrick

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[PATCH v2 0/7] merge-ort: implement support for packing objects together

[Taylor Blau]

(Previously based on 'eb/limit-bulk-checkin-to-blobs', which has since
been merged. This series is now based on the tip of 'master', which is
a9ecda2788 (The eighteenth batch, 2023-10-13) at the time of writing).

This series implements support for a new merge-tree option,
`--write-pack`, which causes any newly-written objects to be packed
together instead of being stored individually as loose.

Much is unchanged since last time, except for a small tweak to one of
the commit messages in response to feedback from Eric W. Biederman. The
series has also been rebased onto 'master', which had a couple of
conflicts that I resolved pertaining to:

  - 9eb5419799 (bulk-checkin: only support blobs in index_bulk_checkin,
    2023-09-26)
  - e0b8c84240 (treewide: fix various bugs w/ OpenSSL 3+ EVP API,
    2023-09-01)

They were mostly trivial resolutions, and the results can be viewed in
the range-diff included below.

(From last time: the motivating use-case behind these changes is to
better support repositories who invoke merge-tree frequently, generating
a potentially large number of loose objects, resulting in a possible
adverse effect on performance.)

Thanks in advance for any review!

Taylor Blau (7):
  bulk-checkin: factor out `format_object_header_hash()`
  bulk-checkin: factor out `prepare_checkpoint()`
  bulk-checkin: factor out `truncate_checkpoint()`
  bulk-checkin: factor our `finalize_checkpoint()`
  bulk-checkin: introduce `index_blob_bulk_checkin_incore()`
  bulk-checkin: introduce `index_tree_bulk_checkin_incore()`
  builtin/merge-tree.c: implement support for `--write-pack`

 Documentation/git-merge-tree.txt |   4 +
 builtin/merge-tree.c             |   5 +
 bulk-checkin.c                   | 258 ++++++++++++++++++++++++++-----
 bulk-checkin.h                   |   8 +
 merge-ort.c                      |  42 +++--
 merge-recursive.h                |   1 +
 t/t4301-merge-tree-write-tree.sh |  93 +++++++++++
 7 files changed, 363 insertions(+), 48 deletions(-)

Range-diff against v1:
1:  37f4072815 ! 1:  edf1cbafc1 bulk-checkin: factor out `format_object_header_hash()`
    @@ bulk-checkin.c: static void prepare_to_stream(struct bulk_checkin_packfile *stat
      }
      
     +static void format_object_header_hash(const struct git_hash_algo *algop,
    -+				      git_hash_ctx *ctx, enum object_type type,
    ++				      git_hash_ctx *ctx,
    ++				      struct hashfile_checkpoint *checkpoint,
    ++				      enum object_type type,
     +				      size_t size)
     +{
     +	unsigned char header[16384];
    @@ bulk-checkin.c: static void prepare_to_stream(struct bulk_checkin_packfile *stat
     +
     +	algop->init_fn(ctx);
     +	algop->update_fn(ctx, header, header_len);
    ++	algop->init_fn(&checkpoint->ctx);
     +}
     +
      static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
    @@ bulk-checkin.c: static int deflate_blob_to_pack(struct bulk_checkin_packfile *st
     -					  OBJ_BLOB, size);
     -	the_hash_algo->init_fn(&ctx);
     -	the_hash_algo->update_fn(&ctx, obuf, header_len);
    -+	format_object_header_hash(the_hash_algo, &ctx, OBJ_BLOB, size);
    +-	the_hash_algo->init_fn(&checkpoint.ctx);
    ++	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
    ++				  size);
      
      	/* Note: idx is non-NULL when we are writing */
      	if ((flags & HASH_WRITE_OBJECT) != 0)
2:  9cc1f3014a ! 2:  b3f89d5853 bulk-checkin: factor out `prepare_checkpoint()`
    @@ Commit message
     
      ## bulk-checkin.c ##
     @@ bulk-checkin.c: static void format_object_header_hash(const struct git_hash_algo *algop,
    - 	algop->update_fn(ctx, header, header_len);
    + 	algop->init_fn(&checkpoint->ctx);
      }
      
     +static void prepare_checkpoint(struct bulk_checkin_packfile *state,
3:  f392ed2211 = 3:  abe4fb0a59 bulk-checkin: factor out `truncate_checkpoint()`
4:  9c6ca564ad = 4:  0b855a6eb7 bulk-checkin: factor our `finalize_checkpoint()`
5:  30ca7334c7 ! 5:  239bf39bfb bulk-checkin: introduce `index_blob_bulk_checkin_incore()`
    @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *st
      
     +static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
     +					       git_hash_ctx *ctx,
    ++					       struct hashfile_checkpoint *checkpoint,
     +					       struct object_id *result_oid,
     +					       const void *buf, size_t size,
     +					       enum object_type type,
     +					       const char *path, unsigned flags)
     +{
    -+	struct hashfile_checkpoint checkpoint = {0};
     +	struct pack_idx_entry *idx = NULL;
     +	off_t already_hashed_to = 0;
     +
    @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *st
     +		CALLOC_ARRAY(idx, 1);
     +
     +	while (1) {
    -+		prepare_checkpoint(state, &checkpoint, idx, flags);
    ++		prepare_checkpoint(state, checkpoint, idx, flags);
     +		if (!stream_obj_to_pack_incore(state, ctx, &already_hashed_to,
     +					       buf, size, type, path, flags))
     +			break;
    -+		truncate_checkpoint(state, &checkpoint, idx);
    ++		truncate_checkpoint(state, checkpoint, idx);
     +	}
     +
    -+	finalize_checkpoint(state, ctx, &checkpoint, idx, result_oid);
    ++	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
     +
     +	return 0;
     +}
    @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *st
     +				       const char *path, unsigned flags)
     +{
     +	git_hash_ctx ctx;
    ++	struct hashfile_checkpoint checkpoint = {0};
     +
    -+	format_object_header_hash(the_hash_algo, &ctx, OBJ_BLOB, size);
    ++	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
    ++				  size);
     +
    -+	return deflate_obj_contents_to_pack_incore(state, &ctx, result_oid,
    -+						   buf, size, OBJ_BLOB, path,
    -+						   flags);
    ++	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
    ++						   result_oid, buf, size,
    ++						   OBJ_BLOB, path, flags);
     +}
     +
      static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
6:  cb0f79cabb ! 6:  57613807d8 bulk-checkin: introduce `index_tree_bulk_checkin_incore()`
    @@ Commit message
         Within `deflate_tree_to_pack_incore()`, the changes should be limited
         to something like:
     
    +        struct strbuf converted = STRBUF_INIT;
             if (the_repository->compat_hash_algo) {
    -          struct strbuf converted = STRBUF_INIT;
               if (convert_object_file(&compat_obj,
                                       the_repository->hash_algo,
                                       the_repository->compat_hash_algo, ...) < 0)
    @@ Commit message
     
               format_object_header_hash(the_repository->compat_hash_algo,
                                         OBJ_TREE, size);
    -
    -          strbuf_release(&converted);
             }
    +        /* compute the converted tree's hash using the compat algorithm */
    +        strbuf_release(&converted);
     
         , assuming related changes throughout the rest of the bulk-checkin
         machinery necessary to update the hash of the converted object, which
    @@ Commit message
     
      ## bulk-checkin.c ##
     @@ bulk-checkin.c: static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
    - 						   flags);
    + 						   OBJ_BLOB, path, flags);
      }
      
     +static int deflate_tree_to_pack_incore(struct bulk_checkin_packfile *state,
    @@ bulk-checkin.c: static int deflate_blob_to_pack_incore(struct bulk_checkin_packf
     +				       const char *path, unsigned flags)
     +{
     +	git_hash_ctx ctx;
    ++	struct hashfile_checkpoint checkpoint = {0};
     +
    -+	format_object_header_hash(the_hash_algo, &ctx, OBJ_TREE, size);
    ++	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_TREE,
    ++				  size);
     +
    -+	return deflate_obj_contents_to_pack_incore(state, &ctx, result_oid,
    -+						   buf, size, OBJ_TREE, path,
    -+						   flags);
    ++	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
    ++						   result_oid, buf, size,
    ++						   OBJ_TREE, path, flags);
     +}
     +
      static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
7:  e969210145 ! 7:  f21400f56c builtin/merge-tree.c: implement support for `--write-pack`
    @@ merge-ort.c
       * We have many arrays of size 3.  Whenever we have such an array, the
     @@ merge-ort.c: static int handle_content_merge(struct merge_options *opt,
      		if ((merge_status < 0) || !result_buf.ptr)
    - 			ret = err(opt, _("Failed to execute internal merge"));
    + 			ret = error(_("failed to execute internal merge"));
      
     -		if (!ret &&
     -		    write_object_file(result_buf.ptr, result_buf.size,
     -				      OBJ_BLOB, &result->oid))
    --			ret = err(opt, _("Unable to add %s to database"),
    --				  path);
    +-			ret = error(_("unable to add %s to database"), path);
     +		if (!ret) {
     +			ret = opt->write_pack
     +				? index_blob_bulk_checkin_incore(&result->oid,
    @@ merge-ort.c: static int handle_content_merge(struct merge_options *opt,
     +						    result_buf.size,
     +						    OBJ_BLOB, &result->oid);
     +			if (ret)
    -+				ret = err(opt, _("Unable to add %s to database"),
    -+					  path);
    ++				ret = error(_("unable to add %s to database"),
    ++					    path);
     +		}
      
      		free(result_buf.ptr);
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 1/7] bulk-checkin: factor out `format_object_header_hash()`

[Taylor Blau]

Before deflating a blob into a pack, the bulk-checkin mechanism prepares
the pack object header by calling `format_object_header()`, and writing
into a scratch buffer, the contents of which eventually makes its way
into the pack.

Future commits will add support for deflating multiple kinds of objects
into a pack, and will likewise need to perform a similar operation as
below.

This is a mostly straightforward extraction, with one notable exception.
Instead of hard-coding `the_hash_algo`, pass it in to the new function
as an argument. This isn't strictly necessary for our immediate purposes
here, but will prove useful in the future if/when the bulk-checkin
mechanism grows support for the hash transition plan.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 25 ++++++++++++++++++-------
 1 file changed, 18 insertions(+), 7 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 6ce62999e5..fd3c110d1c 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -247,6 +247,22 @@ static void prepare_to_stream(struct bulk_checkin_packfile *state,
 		die_errno("unable to write pack header");
 }
 
+static void format_object_header_hash(const struct git_hash_algo *algop,
+				      git_hash_ctx *ctx,
+				      struct hashfile_checkpoint *checkpoint,
+				      enum object_type type,
+				      size_t size)
+{
+	unsigned char header[16384];
+	unsigned header_len = format_object_header((char *)header,
+						   sizeof(header),
+						   type, size);
+
+	algop->init_fn(ctx);
+	algop->update_fn(ctx, header, header_len);
+	algop->init_fn(&checkpoint->ctx);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -254,8 +270,6 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 {
 	off_t seekback, already_hashed_to;
 	git_hash_ctx ctx;
-	unsigned char obuf[16384];
-	unsigned header_len;
 	struct hashfile_checkpoint checkpoint = {0};
 	struct pack_idx_entry *idx = NULL;
 
@@ -263,11 +277,8 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	if (seekback == (off_t) -1)
 		return error("cannot find the current offset");
 
-	header_len = format_object_header((char *)obuf, sizeof(obuf),
-					  OBJ_BLOB, size);
-	the_hash_algo->init_fn(&ctx);
-	the_hash_algo->update_fn(&ctx, obuf, header_len);
-	the_hash_algo->init_fn(&checkpoint.ctx);
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
+				  size);
 
 	/* Note: idx is non-NULL when we are writing */
 	if ((flags & HASH_WRITE_OBJECT) != 0)
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 2/7] bulk-checkin: factor out `prepare_checkpoint()`

[Taylor Blau]

In a similar spirit as the previous commit, factor out the routine to
prepare streaming into a bulk-checkin pack into its own function. Unlike
the previous patch, this is a verbatim copy and paste.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 20 ++++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index fd3c110d1c..c1f5450583 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -263,6 +263,19 @@ static void format_object_header_hash(const struct git_hash_algo *algop,
 	algop->init_fn(&checkpoint->ctx);
 }
 
+static void prepare_checkpoint(struct bulk_checkin_packfile *state,
+			       struct hashfile_checkpoint *checkpoint,
+			       struct pack_idx_entry *idx,
+			       unsigned flags)
+{
+	prepare_to_stream(state, flags);
+	if (idx) {
+		hashfile_checkpoint(state->f, checkpoint);
+		idx->offset = state->offset;
+		crc32_begin(state->f);
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -287,12 +300,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	already_hashed_to = 0;
 
 	while (1) {
-		prepare_to_stream(state, flags);
-		if (idx) {
-			hashfile_checkpoint(state->f, &checkpoint);
-			idx->offset = state->offset;
-			crc32_begin(state->f);
-		}
+		prepare_checkpoint(state, &checkpoint, idx, flags);
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 3/7] bulk-checkin: factor out `truncate_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor our the routine to
truncate a bulk-checkin packfile when writing past the pack size limit.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 27 +++++++++++++++++----------
 1 file changed, 17 insertions(+), 10 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index c1f5450583..b92d7a6f5a 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -276,6 +276,22 @@ static void prepare_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static void truncate_checkpoint(struct bulk_checkin_packfile *state,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx)
+{
+	/*
+	 * Writing this object to the current pack will make
+	 * it too big; we need to truncate it, start a new
+	 * pack, and write into it.
+	 */
+	if (!idx)
+		BUG("should not happen");
+	hashfile_truncate(state->f, checkpoint);
+	state->offset = checkpoint->offset;
+	flush_bulk_checkin_packfile(state);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -304,16 +320,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-		/*
-		 * Writing this object to the current pack will make
-		 * it too big; we need to truncate it, start a new
-		 * pack, and write into it.
-		 */
-		if (!idx)
-			BUG("should not happen");
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		flush_bulk_checkin_packfile(state);
+		truncate_checkpoint(state, &checkpoint, idx);
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 4/7] bulk-checkin: factor our `finalize_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor out the routine to
finalize the just-written object from the bulk-checkin mechanism.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 41 +++++++++++++++++++++++++----------------
 1 file changed, 25 insertions(+), 16 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index b92d7a6f5a..f4914fb6d1 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -292,6 +292,30 @@ static void truncate_checkpoint(struct bulk_checkin_packfile *state,
 	flush_bulk_checkin_packfile(state);
 }
 
+static void finalize_checkpoint(struct bulk_checkin_packfile *state,
+				git_hash_ctx *ctx,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx,
+				struct object_id *result_oid)
+{
+	the_hash_algo->final_oid_fn(result_oid, ctx);
+	if (!idx)
+		return;
+
+	idx->crc32 = crc32_end(state->f);
+	if (already_written(state, result_oid)) {
+		hashfile_truncate(state->f, checkpoint);
+		state->offset = checkpoint->offset;
+		free(idx);
+	} else {
+		oidcpy(&idx->oid, result_oid);
+		ALLOC_GROW(state->written,
+			   state->nr_written + 1,
+			   state->alloc_written);
+		state->written[state->nr_written++] = idx;
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -324,22 +348,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-	the_hash_algo->final_oid_fn(result_oid, &ctx);
-	if (!idx)
-		return 0;
-
-	idx->crc32 = crc32_end(state->f);
-	if (already_written(state, result_oid)) {
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		free(idx);
-	} else {
-		oidcpy(&idx->oid, result_oid);
-		ALLOC_GROW(state->written,
-			   state->nr_written + 1,
-			   state->alloc_written);
-		state->written[state->nr_written++] = idx;
-	}
+	finalize_checkpoint(state, &ctx, &checkpoint, idx, result_oid);
 	return 0;
 }
 
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 5/7] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Taylor Blau]

Now that we have factored out many of the common routines necessary to
index a new object into a pack created by the bulk-checkin machinery, we
can introduce a variant of `index_blob_bulk_checkin()` that acts on
blobs whose contents we can fit in memory.

This will be useful in a couple of more commits in order to provide the
`merge-tree` builtin with a mechanism to create a new pack containing
any objects it created during the merge, instead of storing those
objects individually as loose.

Similar to the existing `index_blob_bulk_checkin()` function, the
entrypoint delegates to `deflate_blob_to_pack_incore()`, which is
responsible for formatting the pack header and then deflating the
contents into the pack. The latter is accomplished by calling
deflate_blob_contents_to_pack_incore(), which takes advantage of the
earlier refactoring and is responsible for writing the object to the
pack and handling any overage from pack.packSizeLimit.

The bulk of the new functionality is implemented in the function
`stream_obj_to_pack_incore()`, which is a generic implementation for
writing objects of arbitrary type (whose contents we can fit in-core)
into a bulk-checkin pack.

The new function shares an unfortunate degree of similarity to the
existing `stream_blob_to_pack()` function. But DRY-ing up these two
would likely be more trouble than it's worth, since the latter has to
deal with reading and writing the contents of the object.

Consistent with the rest of the bulk-checkin mechanism, there are no
direct tests here. In future commits when we expose this new
functionality via the `merge-tree` builtin, we will test it indirectly
there.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 118 +++++++++++++++++++++++++++++++++++++++++++++++++
 bulk-checkin.h |   4 ++
 2 files changed, 122 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index f4914fb6d1..25cd1ffa25 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -140,6 +140,69 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
 	return 0;
 }
 
+static int stream_obj_to_pack_incore(struct bulk_checkin_packfile *state,
+				     git_hash_ctx *ctx,
+				     off_t *already_hashed_to,
+				     const void *buf, size_t size,
+				     enum object_type type,
+				     const char *path, unsigned flags)
+{
+	git_zstream s;
+	unsigned char obuf[16384];
+	unsigned hdrlen;
+	int status = Z_OK;
+	int write_object = (flags & HASH_WRITE_OBJECT);
+
+	git_deflate_init(&s, pack_compression_level);
+
+	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), type, size);
+	s.next_out = obuf + hdrlen;
+	s.avail_out = sizeof(obuf) - hdrlen;
+
+	if (*already_hashed_to < size) {
+		size_t hsize = size - *already_hashed_to;
+		if (hsize) {
+			the_hash_algo->update_fn(ctx, buf, hsize);
+		}
+		*already_hashed_to = size;
+	}
+	s.next_in = (void *)buf;
+	s.avail_in = size;
+
+	while (status != Z_STREAM_END) {
+		status = git_deflate(&s, Z_FINISH);
+		if (!s.avail_out || status == Z_STREAM_END) {
+			if (write_object) {
+				size_t written = s.next_out - obuf;
+
+				/* would we bust the size limit? */
+				if (state->nr_written &&
+				    pack_size_limit_cfg &&
+				    pack_size_limit_cfg < state->offset + written) {
+					git_deflate_abort(&s);
+					return -1;
+				}
+
+				hashwrite(state->f, obuf, written);
+				state->offset += written;
+			}
+			s.next_out = obuf;
+			s.avail_out = sizeof(obuf);
+		}
+
+		switch (status) {
+		case Z_OK:
+		case Z_BUF_ERROR:
+		case Z_STREAM_END:
+			continue;
+		default:
+			die("unexpected deflate failure: %d", status);
+		}
+	}
+	git_deflate_end(&s);
+	return 0;
+}
+
 /*
  * Read the contents from fd for size bytes, streaming it to the
  * packfile in state while updating the hash in ctx. Signal a failure
@@ -316,6 +379,50 @@ static void finalize_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
+					       git_hash_ctx *ctx,
+					       struct hashfile_checkpoint *checkpoint,
+					       struct object_id *result_oid,
+					       const void *buf, size_t size,
+					       enum object_type type,
+					       const char *path, unsigned flags)
+{
+	struct pack_idx_entry *idx = NULL;
+	off_t already_hashed_to = 0;
+
+	/* Note: idx is non-NULL when we are writing */
+	if (flags & HASH_WRITE_OBJECT)
+		CALLOC_ARRAY(idx, 1);
+
+	while (1) {
+		prepare_checkpoint(state, checkpoint, idx, flags);
+		if (!stream_obj_to_pack_incore(state, ctx, &already_hashed_to,
+					       buf, size, type, path, flags))
+			break;
+		truncate_checkpoint(state, checkpoint, idx);
+	}
+
+	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
+
+	return 0;
+}
+
+static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+	struct hashfile_checkpoint checkpoint = {0};
+
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
+				  size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
+						   result_oid, buf, size,
+						   OBJ_BLOB, path, flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -396,6 +503,17 @@ int index_blob_bulk_checkin(struct object_id *oid,
 	return status;
 }
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_blob_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index aa7286a7b3..1b91daeaee 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -13,6 +13,10 @@ int index_blob_bulk_checkin(struct object_id *oid,
 			    int fd, size_t size,
 			    const char *path, unsigned flags);
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 6/7] bulk-checkin: introduce `index_tree_bulk_checkin_incore()`

[Taylor Blau]

The remaining missing piece in order to teach the `merge-tree` builtin
how to write the contents of a merge into a pack is a function to index
tree objects into a bulk-checkin pack.

This patch implements that missing piece, which is a thin wrapper around
all of the functionality introduced in previous commits.

If and when Git gains support for a "compatibility" hash algorithm, the
changes to support that here will be minimal. The bulk-checkin machinery
will need to convert the incoming tree to compute its length under the
compatibility hash, necessary to reconstruct its header. With that
information (and the converted contents of the tree), the bulk-checkin
machinery will have enough to keep track of the converted object's hash
in order to update the compatibility mapping.

Within `deflate_tree_to_pack_incore()`, the changes should be limited
to something like:

    struct strbuf converted = STRBUF_INIT;
    if (the_repository->compat_hash_algo) {
      if (convert_object_file(&compat_obj,
                              the_repository->hash_algo,
                              the_repository->compat_hash_algo, ...) < 0)
        die(...);

      format_object_header_hash(the_repository->compat_hash_algo,
                                OBJ_TREE, size);
    }
    /* compute the converted tree's hash using the compat algorithm */
    strbuf_release(&converted);

, assuming related changes throughout the rest of the bulk-checkin
machinery necessary to update the hash of the converted object, which
are likewise minimal in size.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 27 +++++++++++++++++++++++++++
 bulk-checkin.h |  4 ++++
 2 files changed, 31 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 25cd1ffa25..fe13100e04 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -423,6 +423,22 @@ static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
 						   OBJ_BLOB, path, flags);
 }
 
+static int deflate_tree_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+	struct hashfile_checkpoint checkpoint = {0};
+
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_TREE,
+				  size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
+						   result_oid, buf, size,
+						   OBJ_TREE, path, flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -514,6 +530,17 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 	return status;
 }
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_tree_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index 1b91daeaee..89786b3954 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -17,6 +17,10 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 				   const void *buf, size_t size,
 				   const char *path, unsigned flags);
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.405.gdb2a2f287e

[PATCH v2 7/7] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

When using merge-tree often within a repository[^1], it is possible to
generate a relatively large number of loose objects, which can result in
degraded performance, and inode exhaustion in extreme cases.

Building on the functionality introduced in previous commits, the
bulk-checkin machinery now has support to write arbitrary blob and tree
objects which are small enough to be held in-core. We can use this to
write any blob/tree objects generated by ORT into a separate pack
instead of writing them out individually as loose.

This functionality is gated behind a new `--write-pack` option to
`merge-tree` that works with the (non-deprecated) `--write-tree` mode.

The implementation is relatively straightforward. There are two spots
within the ORT mechanism where we call `write_object_file()`, one for
content differences within blobs, and another to assemble any new trees
necessary to construct the merge. In each of those locations,
conditionally replace calls to `write_object_file()` with
`index_blob_bulk_checkin_incore()` or `index_tree_bulk_checkin_incore()`
depending on which kind of object we are writing.

The only remaining task is to begin and end the transaction necessary to
initialize the bulk-checkin machinery, and move any new pack(s) it
created into the main object store.

[^1]: Such is the case at GitHub, where we run presumptive "test merges"
  on open pull requests to see whether or not we can light up the merge
  button green depending on whether or not the presumptive merge was
  conflicted.

  This is done in response to a number of user-initiated events,
  including viewing an open pull request whose last test merge is stale
  with respect to the current base and tip of the pull request. As a
  result, merge-tree can be run very frequently on large, active
  repositories.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/git-merge-tree.txt |  4 ++
 builtin/merge-tree.c             |  5 ++
 merge-ort.c                      | 42 +++++++++++----
 merge-recursive.h                |  1 +
 t/t4301-merge-tree-write-tree.sh | 93 ++++++++++++++++++++++++++++++++
 5 files changed, 136 insertions(+), 9 deletions(-)

diff --git a/Documentation/git-merge-tree.txt b/Documentation/git-merge-tree.txt
index ffc4fbf7e8..9d37609ef1 100644
--- a/Documentation/git-merge-tree.txt
+++ b/Documentation/git-merge-tree.txt
@@ -69,6 +69,10 @@ OPTIONS
 	specify a merge-base for the merge, and specifying multiple bases is
 	currently not supported. This option is incompatible with `--stdin`.
 
+--write-pack::
+	Write any new objects into a separate packfile instead of as
+	individual loose objects.
+
 [[OUTPUT]]
 OUTPUT
 ------
diff --git a/builtin/merge-tree.c b/builtin/merge-tree.c
index 0de42aecf4..672ebd4c54 100644
--- a/builtin/merge-tree.c
+++ b/builtin/merge-tree.c
@@ -18,6 +18,7 @@
 #include "quote.h"
 #include "tree.h"
 #include "config.h"
+#include "bulk-checkin.h"
 
 static int line_termination = '\n';
 
@@ -414,6 +415,7 @@ struct merge_tree_options {
 	int show_messages;
 	int name_only;
 	int use_stdin;
+	int write_pack;
 };
 
 static int real_merge(struct merge_tree_options *o,
@@ -440,6 +442,7 @@ static int real_merge(struct merge_tree_options *o,
 	init_merge_options(&opt, the_repository);
 
 	opt.show_rename_progress = 0;
+	opt.write_pack = o->write_pack;
 
 	opt.branch1 = branch1;
 	opt.branch2 = branch2;
@@ -548,6 +551,8 @@ int cmd_merge_tree(int argc, const char **argv, const char *prefix)
 			   &merge_base,
 			   N_("commit"),
 			   N_("specify a merge-base for the merge")),
+		OPT_BOOL(0, "write-pack", &o.write_pack,
+			 N_("write new objects to a pack instead of as loose")),
 		OPT_END()
 	};
 
diff --git a/merge-ort.c b/merge-ort.c
index 7857ce9fbd..e198d2bc2b 100644
--- a/merge-ort.c
+++ b/merge-ort.c
@@ -48,6 +48,7 @@
 #include "tree.h"
 #include "unpack-trees.h"
 #include "xdiff-interface.h"
+#include "bulk-checkin.h"
 
 /*
  * We have many arrays of size 3.  Whenever we have such an array, the
@@ -2107,10 +2108,19 @@ static int handle_content_merge(struct merge_options *opt,
 		if ((merge_status < 0) || !result_buf.ptr)
 			ret = error(_("failed to execute internal merge"));
 
-		if (!ret &&
-		    write_object_file(result_buf.ptr, result_buf.size,
-				      OBJ_BLOB, &result->oid))
-			ret = error(_("unable to add %s to database"), path);
+		if (!ret) {
+			ret = opt->write_pack
+				? index_blob_bulk_checkin_incore(&result->oid,
+								 result_buf.ptr,
+								 result_buf.size,
+								 path, 1)
+				: write_object_file(result_buf.ptr,
+						    result_buf.size,
+						    OBJ_BLOB, &result->oid);
+			if (ret)
+				ret = error(_("unable to add %s to database"),
+					    path);
+		}
 
 		free(result_buf.ptr);
 		if (ret)
@@ -3596,7 +3606,8 @@ static int tree_entry_order(const void *a_, const void *b_)
 				 b->string, strlen(b->string), bmi->result.mode);
 }
 
-static int write_tree(struct object_id *result_oid,
+static int write_tree(struct merge_options *opt,
+		      struct object_id *result_oid,
 		      struct string_list *versions,
 		      unsigned int offset,
 		      size_t hash_size)
@@ -3630,8 +3641,14 @@ static int write_tree(struct object_id *result_oid,
 	}
 
 	/* Write this object file out, and record in result_oid */
-	if (write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid))
+	ret = opt->write_pack
+		? index_tree_bulk_checkin_incore(result_oid,
+						 buf.buf, buf.len, "", 1)
+		: write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid);
+
+	if (ret)
 		ret = -1;
+
 	strbuf_release(&buf);
 	return ret;
 }
@@ -3796,8 +3813,8 @@ static int write_completed_directory(struct merge_options *opt,
 		 */
 		dir_info->is_null = 0;
 		dir_info->result.mode = S_IFDIR;
-		if (write_tree(&dir_info->result.oid, &info->versions, offset,
-			       opt->repo->hash_algo->rawsz) < 0)
+		if (write_tree(opt, &dir_info->result.oid, &info->versions,
+			       offset, opt->repo->hash_algo->rawsz) < 0)
 			ret = -1;
 	}
 
@@ -4331,9 +4348,13 @@ static int process_entries(struct merge_options *opt,
 		fflush(stdout);
 		BUG("dir_metadata accounting completely off; shouldn't happen");
 	}
-	if (write_tree(result_oid, &dir_metadata.versions, 0,
+	if (write_tree(opt, result_oid, &dir_metadata.versions, 0,
 		       opt->repo->hash_algo->rawsz) < 0)
 		ret = -1;
+
+	if (opt->write_pack)
+		end_odb_transaction();
+
 cleanup:
 	string_list_clear(&plist, 0);
 	string_list_clear(&dir_metadata.versions, 0);
@@ -4877,6 +4898,9 @@ static void merge_start(struct merge_options *opt, struct merge_result *result)
 	 */
 	strmap_init(&opt->priv->conflicts);
 
+	if (opt->write_pack)
+		begin_odb_transaction();
+
 	trace2_region_leave("merge", "allocate/init", opt->repo);
 }
 
diff --git a/merge-recursive.h b/merge-recursive.h
index b88000e3c2..156e160876 100644
--- a/merge-recursive.h
+++ b/merge-recursive.h
@@ -48,6 +48,7 @@ struct merge_options {
 	unsigned renormalize : 1;
 	unsigned record_conflict_msgs_as_headers : 1;
 	const char *msg_header_prefix;
+	unsigned write_pack : 1;
 
 	/* internal fields used by the implementation */
 	struct merge_options_internal *priv;
diff --git a/t/t4301-merge-tree-write-tree.sh b/t/t4301-merge-tree-write-tree.sh
index 250f721795..2d81ff4de5 100755
--- a/t/t4301-merge-tree-write-tree.sh
+++ b/t/t4301-merge-tree-write-tree.sh
@@ -922,4 +922,97 @@ test_expect_success 'check the input format when --stdin is passed' '
 	test_cmp expect actual
 '
 
+packdir=".git/objects/pack"
+
+test_expect_success 'merge-tree can pack its result with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+
+	# base has lines [3, 4, 5]
+	#   - side adds to the beginning, resulting in [1, 2, 3, 4, 5]
+	#   - other adds to the end, resulting in [3, 4, 5, 6, 7]
+	#
+	# merging the two should result in a new blob object containing
+	# [1, 2, 3, 4, 5, 6, 7], along with a new tree.
+	test_commit -C repo base file "$(test_seq 3 5)" &&
+	git -C repo branch -M main &&
+	git -C repo checkout -b side main &&
+	test_commit -C repo side file "$(test_seq 1 5)" &&
+	git -C repo checkout -b other main &&
+	test_commit -C repo other file "$(test_seq 3 7)" &&
+
+	find repo/$packdir -type f -name "pack-*.idx" >packs.before &&
+	tree="$(git -C repo merge-tree --write-pack \
+		refs/tags/side refs/tags/other)" &&
+	blob="$(git -C repo rev-parse $tree:file)" &&
+	find repo/$packdir -type f -name "pack-*.idx" >packs.after &&
+
+	test_must_be_empty packs.before &&
+	test_line_count = 1 packs.after &&
+
+	git show-index <$(cat packs.after) >objects &&
+	test_line_count = 2 objects &&
+	grep "^[1-9][0-9]* $tree" objects &&
+	grep "^[1-9][0-9]* $blob" objects
+'
+
+test_expect_success 'merge-tree can write multiple packs with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+	(
+		cd repo &&
+
+		git config pack.packSizeLimit 512 &&
+
+		test_seq 512 >f &&
+
+		# "f" contains roughly ~2,000 bytes.
+		#
+		# Each side ("foo" and "bar") adds a small amount of data at the
+		# beginning and end of "base", respectively.
+		git add f &&
+		test_tick &&
+		git commit -m base &&
+		git branch -M main &&
+
+		git checkout -b foo main &&
+		{
+			echo foo && cat f
+		} >f.tmp &&
+		mv f.tmp f &&
+		git add f &&
+		test_tick &&
+		git commit -m foo &&
+
+		git checkout -b bar main &&
+		echo bar >>f &&
+		git add f &&
+		test_tick &&
+		git commit -m bar &&
+
+		find $packdir -type f -name "pack-*.idx" >packs.before &&
+		# Merging either side should result in a new object which is
+		# larger than 1M, thus the result should be split into two
+		# separate packs.
+		tree="$(git merge-tree --write-pack \
+			refs/heads/foo refs/heads/bar)" &&
+		blob="$(git rev-parse $tree:f)" &&
+		find $packdir -type f -name "pack-*.idx" >packs.after &&
+
+		test_must_be_empty packs.before &&
+		test_line_count = 2 packs.after &&
+		for idx in $(cat packs.after)
+		do
+			git show-index <$idx || return 1
+		done >objects &&
+
+		# The resulting set of packs should contain one copy of both
+		# objects, each in a separate pack.
+		test_line_count = 2 objects &&
+		grep "^[1-9][0-9]* $tree" objects &&
+		grep "^[1-9][0-9]* $blob" objects
+
+	)
+'
+
 test_done
-- 
2.42.0.405.gdb2a2f287e

Re: [PATCH v2 5/7] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

>  bulk-checkin.c | 118 +++++++++++++++++++++++++++++++++++++++++++++++++
>  bulk-checkin.h |   4 ++
>  2 files changed, 122 insertions(+)

Unlike the previous four, which were very clear refactoring to
create reusable helper functions, this step leaves a bad aftertaste
after reading twice, and I think what is disturbing is that many new
lines are pretty much literally copied from stream_blob_to_pack().

I wonder if we can introduce an "input" source abstraction, that
replaces "fd" and "size" (and "path" for error reporting) parameters
to the stream_blob_to_pack(), so that the bulk of the implementation
of stream_blob_to_pack() can call its .read() method to read bytes
up to "size" from such an abstracted interface?  That would be a
good sized first half of this change.  Then in the second half, you
can add another "input" source that works with in-core "buf" and
"size", whose .read() method will merely be a memcpy().

That way, we will have two functions, one for stream_obj_to_pack()
that reads from an open file descriptor, and the other for
stream_obj_to_pack_incore() that reads from an in-core buffer,
sharing the bulk of the implementation that is extracted from the
current code, which hopefully be easier to audit.

> diff --git a/bulk-checkin.c b/bulk-checkin.c
> index f4914fb6d1..25cd1ffa25 100644
> --- a/bulk-checkin.c
> +++ b/bulk-checkin.c
> @@ -140,6 +140,69 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
>  	return 0;
>  }
>  
> +static int stream_obj_to_pack_incore(struct bulk_checkin_packfile *state,
> +				     git_hash_ctx *ctx,
> +				     off_t *already_hashed_to,
> +				     const void *buf, size_t size,
> +				     enum object_type type,
> +				     const char *path, unsigned flags)
> +{
> +	git_zstream s;
> +	unsigned char obuf[16384];
> +	unsigned hdrlen;
> +	int status = Z_OK;
> +	int write_object = (flags & HASH_WRITE_OBJECT);
> +
> +	git_deflate_init(&s, pack_compression_level);
> +
> +	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), type, size);
> +	s.next_out = obuf + hdrlen;
> +	s.avail_out = sizeof(obuf) - hdrlen;
> +
> +	if (*already_hashed_to < size) {
> +		size_t hsize = size - *already_hashed_to;
> +		if (hsize) {
> +			the_hash_algo->update_fn(ctx, buf, hsize);
> +		}
> +		*already_hashed_to = size;
> +	}
> +	s.next_in = (void *)buf;
> +	s.avail_in = size;
> +
> +	while (status != Z_STREAM_END) {
> +		status = git_deflate(&s, Z_FINISH);
> +		if (!s.avail_out || status == Z_STREAM_END) {
> +			if (write_object) {
> +				size_t written = s.next_out - obuf;
> +
> +				/* would we bust the size limit? */
> +				if (state->nr_written &&
> +				    pack_size_limit_cfg &&
> +				    pack_size_limit_cfg < state->offset + written) {
> +					git_deflate_abort(&s);
> +					return -1;
> +				}
> +
> +				hashwrite(state->f, obuf, written);
> +				state->offset += written;
> +			}
> +			s.next_out = obuf;
> +			s.avail_out = sizeof(obuf);
> +		}
> +
> +		switch (status) {
> +		case Z_OK:
> +		case Z_BUF_ERROR:
> +		case Z_STREAM_END:
> +			continue;
> +		default:
> +			die("unexpected deflate failure: %d", status);
> +		}
> +	}
> +	git_deflate_end(&s);
> +	return 0;
> +}
> +
>  /*
>   * Read the contents from fd for size bytes, streaming it to the
>   * packfile in state while updating the hash in ctx. Signal a failure
> @@ -316,6 +379,50 @@ static void finalize_checkpoint(struct bulk_checkin_packfile *state,
>  	}
>  }
>  
> +static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
> +					       git_hash_ctx *ctx,
> +					       struct hashfile_checkpoint *checkpoint,
> +					       struct object_id *result_oid,
> +					       const void *buf, size_t size,
> +					       enum object_type type,
> +					       const char *path, unsigned flags)
> +{
> +	struct pack_idx_entry *idx = NULL;
> +	off_t already_hashed_to = 0;
> +
> +	/* Note: idx is non-NULL when we are writing */
> +	if (flags & HASH_WRITE_OBJECT)
> +		CALLOC_ARRAY(idx, 1);
> +
> +	while (1) {
> +		prepare_checkpoint(state, checkpoint, idx, flags);
> +		if (!stream_obj_to_pack_incore(state, ctx, &already_hashed_to,
> +					       buf, size, type, path, flags))
> +			break;
> +		truncate_checkpoint(state, checkpoint, idx);
> +	}
> +
> +	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
> +
> +	return 0;
> +}
> +
> +static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
> +				       struct object_id *result_oid,
> +				       const void *buf, size_t size,
> +				       const char *path, unsigned flags)
> +{
> +	git_hash_ctx ctx;
> +	struct hashfile_checkpoint checkpoint = {0};
> +
> +	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
> +				  size);
> +
> +	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
> +						   result_oid, buf, size,
> +						   OBJ_BLOB, path, flags);
> +}
> +
>  static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
>  				struct object_id *result_oid,
>  				int fd, size_t size,
> @@ -396,6 +503,17 @@ int index_blob_bulk_checkin(struct object_id *oid,
>  	return status;
>  }
>  
> +int index_blob_bulk_checkin_incore(struct object_id *oid,
> +				   const void *buf, size_t size,
> +				   const char *path, unsigned flags)
> +{
> +	int status = deflate_blob_to_pack_incore(&bulk_checkin_packfile, oid,
> +						 buf, size, path, flags);
> +	if (!odb_transaction_nesting)
> +		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
> +	return status;
> +}
> +
>  void begin_odb_transaction(void)
>  {
>  	odb_transaction_nesting += 1;
> diff --git a/bulk-checkin.h b/bulk-checkin.h
> index aa7286a7b3..1b91daeaee 100644
> --- a/bulk-checkin.h
> +++ b/bulk-checkin.h
> @@ -13,6 +13,10 @@ int index_blob_bulk_checkin(struct object_id *oid,
>  			    int fd, size_t size,
>  			    const char *path, unsigned flags);
>  
> +int index_blob_bulk_checkin_incore(struct object_id *oid,
> +				   const void *buf, size_t size,
> +				   const char *path, unsigned flags);
> +
>  /*
>   * Tell the object database to optimize for adding
>   * multiple objects. end_odb_transaction must be called

Re: [PATCH v2 5/7] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Taylor Blau]

On Tue, Oct 17, 2023 at 07:18:04PM -0700, Junio C Hamano wrote:
> Taylor Blau <me@ttaylorr.com> writes:
>
> >  bulk-checkin.c | 118 +++++++++++++++++++++++++++++++++++++++++++++++++
> >  bulk-checkin.h |   4 ++
> >  2 files changed, 122 insertions(+)
>
> Unlike the previous four, which were very clear refactoring to
> create reusable helper functions, this step leaves a bad aftertaste
> after reading twice, and I think what is disturbing is that many new
> lines are pretty much literally copied from stream_blob_to_pack().
>
> I wonder if we can introduce an "input" source abstraction, that
> replaces "fd" and "size" (and "path" for error reporting) parameters
> to the stream_blob_to_pack(), so that the bulk of the implementation
> of stream_blob_to_pack() can call its .read() method to read bytes
> up to "size" from such an abstracted interface?  That would be a
> good sized first half of this change.  Then in the second half, you
> can add another "input" source that works with in-core "buf" and
> "size", whose .read() method will merely be a memcpy().

Thanks, I like this idea. I had initially avoided it in the first couple
of rounds, because the abstraction felt clunky and involved an
unnecessary extra memcpy().

But having applied your suggestion here, I think that the price is well
worth the result, which is that `stream_blob_to_pack()` does not have to
be implemented twice with very subtle differences.

Thanks again for the suggestion, I'm really pleased with how it came
out. Reroll coming shortly...

Thanks,
Taylor

[PATCH v3 00/10] merge-ort: implement support for packing objects together

[Taylor Blau]

This series implements support for a new merge-tree option,
`--write-pack`, which causes any newly-written objects to be packed
together instead of being stored individually as loose.

The notable change from last time is in response to a suggestion[1] from
Junio to factor out an abstract bulk-checkin "source", which ended up
reducing the duplication between a couple of functions in the earlier
round by a significant degree.

Beyond that, the changes since last time can be viewed in the range-diff
below. Thanks in advance for any review!

[1]: https://lore.kernel.org/git/xmqq5y34wu5f.fsf@gitster.g/

Taylor Blau (10):
  bulk-checkin: factor out `format_object_header_hash()`
  bulk-checkin: factor out `prepare_checkpoint()`
  bulk-checkin: factor out `truncate_checkpoint()`
  bulk-checkin: factor out `finalize_checkpoint()`
  bulk-checkin: extract abstract `bulk_checkin_source`
  bulk-checkin: implement `SOURCE_INCORE` mode for `bulk_checkin_source`
  bulk-checkin: generify `stream_blob_to_pack()` for arbitrary types
  bulk-checkin: introduce `index_blob_bulk_checkin_incore()`
  bulk-checkin: introduce `index_tree_bulk_checkin_incore()`
  builtin/merge-tree.c: implement support for `--write-pack`

 Documentation/git-merge-tree.txt |   4 +
 builtin/merge-tree.c             |   5 +
 bulk-checkin.c                   | 288 +++++++++++++++++++++++++------
 bulk-checkin.h                   |   8 +
 merge-ort.c                      |  42 ++++-
 merge-recursive.h                |   1 +
 t/t4301-merge-tree-write-tree.sh |  93 ++++++++++
 7 files changed, 381 insertions(+), 60 deletions(-)

Range-diff against v2:
 1:  edf1cbafc1 =  1:  2dffa45183 bulk-checkin: factor out `format_object_header_hash()`
 2:  b3f89d5853 =  2:  7a10dc794a bulk-checkin: factor out `prepare_checkpoint()`
 3:  abe4fb0a59 =  3:  20c32d2178 bulk-checkin: factor out `truncate_checkpoint()`
 4:  0b855a6eb7 !  4:  893051d0b7 bulk-checkin: factor our `finalize_checkpoint()`
    @@ Metadata
     Author: Taylor Blau <me@ttaylorr.com>
     
      ## Commit message ##
    -    bulk-checkin: factor our `finalize_checkpoint()`
    +    bulk-checkin: factor out `finalize_checkpoint()`
     
         In a similar spirit as previous commits, factor out the routine to
         finalize the just-written object from the bulk-checkin mechanism.
 -:  ---------- >  5:  da52ec8380 bulk-checkin: extract abstract `bulk_checkin_source`
 -:  ---------- >  6:  4e9bac5bc1 bulk-checkin: implement `SOURCE_INCORE` mode for `bulk_checkin_source`
 -:  ---------- >  7:  04ec74e357 bulk-checkin: generify `stream_blob_to_pack()` for arbitrary types
 5:  239bf39bfb !  8:  8667b76365 bulk-checkin: introduce `index_blob_bulk_checkin_incore()`
    @@ Commit message
         entrypoint delegates to `deflate_blob_to_pack_incore()`, which is
         responsible for formatting the pack header and then deflating the
         contents into the pack. The latter is accomplished by calling
    -    deflate_blob_contents_to_pack_incore(), which takes advantage of the
    -    earlier refactoring and is responsible for writing the object to the
    +    deflate_obj_contents_to_pack_incore(), which takes advantage of the
    +    earlier refactorings and is responsible for writing the object to the
         pack and handling any overage from pack.packSizeLimit.
     
         The bulk of the new functionality is implemented in the function
    -    `stream_obj_to_pack_incore()`, which is a generic implementation for
    -    writing objects of arbitrary type (whose contents we can fit in-core)
    -    into a bulk-checkin pack.
    -
    -    The new function shares an unfortunate degree of similarity to the
    -    existing `stream_blob_to_pack()` function. But DRY-ing up these two
    -    would likely be more trouble than it's worth, since the latter has to
    -    deal with reading and writing the contents of the object.
    +    `stream_obj_to_pack()`, which can handle streaming objects from memory
    +    to the bulk-checkin pack as a result of the earlier refactoring.
     
         Consistent with the rest of the bulk-checkin mechanism, there are no
         direct tests here. In future commits when we expose this new
    @@ Commit message
         Signed-off-by: Taylor Blau <me@ttaylorr.com>
     
      ## bulk-checkin.c ##
    -@@ bulk-checkin.c: static int already_written(struct bulk_checkin_packfile *state, struct object_id
    - 	return 0;
    - }
    - 
    -+static int stream_obj_to_pack_incore(struct bulk_checkin_packfile *state,
    -+				     git_hash_ctx *ctx,
    -+				     off_t *already_hashed_to,
    -+				     const void *buf, size_t size,
    -+				     enum object_type type,
    -+				     const char *path, unsigned flags)
    -+{
    -+	git_zstream s;
    -+	unsigned char obuf[16384];
    -+	unsigned hdrlen;
    -+	int status = Z_OK;
    -+	int write_object = (flags & HASH_WRITE_OBJECT);
    -+
    -+	git_deflate_init(&s, pack_compression_level);
    -+
    -+	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), type, size);
    -+	s.next_out = obuf + hdrlen;
    -+	s.avail_out = sizeof(obuf) - hdrlen;
    -+
    -+	if (*already_hashed_to < size) {
    -+		size_t hsize = size - *already_hashed_to;
    -+		if (hsize) {
    -+			the_hash_algo->update_fn(ctx, buf, hsize);
    -+		}
    -+		*already_hashed_to = size;
    -+	}
    -+	s.next_in = (void *)buf;
    -+	s.avail_in = size;
    -+
    -+	while (status != Z_STREAM_END) {
    -+		status = git_deflate(&s, Z_FINISH);
    -+		if (!s.avail_out || status == Z_STREAM_END) {
    -+			if (write_object) {
    -+				size_t written = s.next_out - obuf;
    -+
    -+				/* would we bust the size limit? */
    -+				if (state->nr_written &&
    -+				    pack_size_limit_cfg &&
    -+				    pack_size_limit_cfg < state->offset + written) {
    -+					git_deflate_abort(&s);
    -+					return -1;
    -+				}
    -+
    -+				hashwrite(state->f, obuf, written);
    -+				state->offset += written;
    -+			}
    -+			s.next_out = obuf;
    -+			s.avail_out = sizeof(obuf);
    -+		}
    -+
    -+		switch (status) {
    -+		case Z_OK:
    -+		case Z_BUF_ERROR:
    -+		case Z_STREAM_END:
    -+			continue;
    -+		default:
    -+			die("unexpected deflate failure: %d", status);
    -+		}
    -+	}
    -+	git_deflate_end(&s);
    -+	return 0;
    -+}
    -+
    - /*
    -  * Read the contents from fd for size bytes, streaming it to the
    -  * packfile in state while updating the hash in ctx. Signal a failure
     @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *state,
      	}
      }
    @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *st
     +{
     +	struct pack_idx_entry *idx = NULL;
     +	off_t already_hashed_to = 0;
    ++	struct bulk_checkin_source source = {
    ++		.type = SOURCE_INCORE,
    ++		.buf = buf,
    ++		.size = size,
    ++		.read = 0,
    ++		.path = path,
    ++	};
     +
     +	/* Note: idx is non-NULL when we are writing */
     +	if (flags & HASH_WRITE_OBJECT)
    @@ bulk-checkin.c: static void finalize_checkpoint(struct bulk_checkin_packfile *st
     +
     +	while (1) {
     +		prepare_checkpoint(state, checkpoint, idx, flags);
    -+		if (!stream_obj_to_pack_incore(state, ctx, &already_hashed_to,
    -+					       buf, size, type, path, flags))
    ++
    ++		if (!stream_obj_to_pack(state, ctx, &already_hashed_to, &source,
    ++					type, flags))
     +			break;
     +		truncate_checkpoint(state, checkpoint, idx);
    ++		bulk_checkin_source_seek_to(&source, 0);
     +	}
     +
     +	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
 6:  57613807d8 =  9:  cba043ef14 bulk-checkin: introduce `index_tree_bulk_checkin_incore()`
 7:  f21400f56c = 10:  ae70508037 builtin/merge-tree.c: implement support for `--write-pack`
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 01/10] bulk-checkin: factor out `format_object_header_hash()`

[Taylor Blau]

Before deflating a blob into a pack, the bulk-checkin mechanism prepares
the pack object header by calling `format_object_header()`, and writing
into a scratch buffer, the contents of which eventually makes its way
into the pack.

Future commits will add support for deflating multiple kinds of objects
into a pack, and will likewise need to perform a similar operation as
below.

This is a mostly straightforward extraction, with one notable exception.
Instead of hard-coding `the_hash_algo`, pass it in to the new function
as an argument. This isn't strictly necessary for our immediate purposes
here, but will prove useful in the future if/when the bulk-checkin
mechanism grows support for the hash transition plan.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 25 ++++++++++++++++++-------
 1 file changed, 18 insertions(+), 7 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 6ce62999e5..fd3c110d1c 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -247,6 +247,22 @@ static void prepare_to_stream(struct bulk_checkin_packfile *state,
 		die_errno("unable to write pack header");
 }
 
+static void format_object_header_hash(const struct git_hash_algo *algop,
+				      git_hash_ctx *ctx,
+				      struct hashfile_checkpoint *checkpoint,
+				      enum object_type type,
+				      size_t size)
+{
+	unsigned char header[16384];
+	unsigned header_len = format_object_header((char *)header,
+						   sizeof(header),
+						   type, size);
+
+	algop->init_fn(ctx);
+	algop->update_fn(ctx, header, header_len);
+	algop->init_fn(&checkpoint->ctx);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -254,8 +270,6 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 {
 	off_t seekback, already_hashed_to;
 	git_hash_ctx ctx;
-	unsigned char obuf[16384];
-	unsigned header_len;
 	struct hashfile_checkpoint checkpoint = {0};
 	struct pack_idx_entry *idx = NULL;
 
@@ -263,11 +277,8 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	if (seekback == (off_t) -1)
 		return error("cannot find the current offset");
 
-	header_len = format_object_header((char *)obuf, sizeof(obuf),
-					  OBJ_BLOB, size);
-	the_hash_algo->init_fn(&ctx);
-	the_hash_algo->update_fn(&ctx, obuf, header_len);
-	the_hash_algo->init_fn(&checkpoint.ctx);
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
+				  size);
 
 	/* Note: idx is non-NULL when we are writing */
 	if ((flags & HASH_WRITE_OBJECT) != 0)
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 02/10] bulk-checkin: factor out `prepare_checkpoint()`

[Taylor Blau]

In a similar spirit as the previous commit, factor out the routine to
prepare streaming into a bulk-checkin pack into its own function. Unlike
the previous patch, this is a verbatim copy and paste.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 20 ++++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index fd3c110d1c..c1f5450583 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -263,6 +263,19 @@ static void format_object_header_hash(const struct git_hash_algo *algop,
 	algop->init_fn(&checkpoint->ctx);
 }
 
+static void prepare_checkpoint(struct bulk_checkin_packfile *state,
+			       struct hashfile_checkpoint *checkpoint,
+			       struct pack_idx_entry *idx,
+			       unsigned flags)
+{
+	prepare_to_stream(state, flags);
+	if (idx) {
+		hashfile_checkpoint(state->f, checkpoint);
+		idx->offset = state->offset;
+		crc32_begin(state->f);
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -287,12 +300,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	already_hashed_to = 0;
 
 	while (1) {
-		prepare_to_stream(state, flags);
-		if (idx) {
-			hashfile_checkpoint(state->f, &checkpoint);
-			idx->offset = state->offset;
-			crc32_begin(state->f);
-		}
+		prepare_checkpoint(state, &checkpoint, idx, flags);
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 03/10] bulk-checkin: factor out `truncate_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor our the routine to
truncate a bulk-checkin packfile when writing past the pack size limit.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 27 +++++++++++++++++----------
 1 file changed, 17 insertions(+), 10 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index c1f5450583..b92d7a6f5a 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -276,6 +276,22 @@ static void prepare_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static void truncate_checkpoint(struct bulk_checkin_packfile *state,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx)
+{
+	/*
+	 * Writing this object to the current pack will make
+	 * it too big; we need to truncate it, start a new
+	 * pack, and write into it.
+	 */
+	if (!idx)
+		BUG("should not happen");
+	hashfile_truncate(state->f, checkpoint);
+	state->offset = checkpoint->offset;
+	flush_bulk_checkin_packfile(state);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -304,16 +320,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
 					 fd, size, path, flags))
 			break;
-		/*
-		 * Writing this object to the current pack will make
-		 * it too big; we need to truncate it, start a new
-		 * pack, and write into it.
-		 */
-		if (!idx)
-			BUG("should not happen");
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		flush_bulk_checkin_packfile(state);
+		truncate_checkpoint(state, &checkpoint, idx);
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 04/10] bulk-checkin: factor out `finalize_checkpoint()`

[Taylor Blau]

In a similar spirit as previous commits, factor out the routine to
finalize the just-written object from the bulk-checkin mechanism.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 41 +++++++++++++++++++++++++----------------
 1 file changed, 25 insertions(+), 16 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index b92d7a6f5a..f4914fb6d1 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -292,6 +292,30 @@ static void truncate_checkpoint(struct bulk_checkin_packfile *state,
 	flush_bulk_checkin_packfile(state);
 }
 
+static void finalize_checkpoint(struct bulk_checkin_packfile *state,
+				git_hash_ctx *ctx,
+				struct hashfile_checkpoint *checkpoint,
+				struct pack_idx_entry *idx,
+				struct object_id *result_oid)
+{
+	the_hash_algo->final_oid_fn(result_oid, ctx);
+	if (!idx)
+		return;
+
+	idx->crc32 = crc32_end(state->f);
+	if (already_written(state, result_oid)) {
+		hashfile_truncate(state->f, checkpoint);
+		state->offset = checkpoint->offset;
+		free(idx);
+	} else {
+		oidcpy(&idx->oid, result_oid);
+		ALLOC_GROW(state->written,
+			   state->nr_written + 1,
+			   state->alloc_written);
+		state->written[state->nr_written++] = idx;
+	}
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -324,22 +348,7 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
 			return error("cannot seek back");
 	}
-	the_hash_algo->final_oid_fn(result_oid, &ctx);
-	if (!idx)
-		return 0;
-
-	idx->crc32 = crc32_end(state->f);
-	if (already_written(state, result_oid)) {
-		hashfile_truncate(state->f, &checkpoint);
-		state->offset = checkpoint.offset;
-		free(idx);
-	} else {
-		oidcpy(&idx->oid, result_oid);
-		ALLOC_GROW(state->written,
-			   state->nr_written + 1,
-			   state->alloc_written);
-		state->written[state->nr_written++] = idx;
-	}
+	finalize_checkpoint(state, &ctx, &checkpoint, idx, result_oid);
 	return 0;
 }
 
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 05/10] bulk-checkin: extract abstract `bulk_checkin_source`

[Taylor Blau]

A future commit will want to implement a very similar routine as in
`stream_blob_to_pack()` with two notable changes:

  - Instead of streaming just OBJ_BLOBs, this new function may want to
    stream objects of arbitrary type.

  - Instead of streaming the object's contents from an open
    file-descriptor, this new function may want to "stream" its contents
    from memory.

To avoid duplicating a significant chunk of code between the existing
`stream_blob_to_pack()`, extract an abstract `bulk_checkin_source`. This
concept currently is a thin layer of `lseek()` and `read_in_full()`, but
will grow to understand how to perform analogous operations when writing
out an object's contents from memory.

Suggested-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 61 +++++++++++++++++++++++++++++++++++++++++++-------
 1 file changed, 53 insertions(+), 8 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index f4914fb6d1..fc1d902018 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -140,8 +140,41 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
 	return 0;
 }
 
+struct bulk_checkin_source {
+	enum { SOURCE_FILE } type;
+
+	/* SOURCE_FILE fields */
+	int fd;
+
+	/* common fields */
+	size_t size;
+	const char *path;
+};
+
+static off_t bulk_checkin_source_seek_to(struct bulk_checkin_source *source,
+					 off_t offset)
+{
+	switch (source->type) {
+	case SOURCE_FILE:
+		return lseek(source->fd, offset, SEEK_SET);
+	default:
+		BUG("unknown bulk-checkin source: %d", source->type);
+	}
+}
+
+static ssize_t bulk_checkin_source_read(struct bulk_checkin_source *source,
+					void *buf, size_t nr)
+{
+	switch (source->type) {
+	case SOURCE_FILE:
+		return read_in_full(source->fd, buf, nr);
+	default:
+		BUG("unknown bulk-checkin source: %d", source->type);
+	}
+}
+
 /*
- * Read the contents from fd for size bytes, streaming it to the
+ * Read the contents from 'source' for 'size' bytes, streaming it to the
  * packfile in state while updating the hash in ctx. Signal a failure
  * by returning a negative value when the resulting pack would exceed
  * the pack size limit and this is not the first object in the pack,
@@ -157,7 +190,7 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
  */
 static int stream_blob_to_pack(struct bulk_checkin_packfile *state,
 			       git_hash_ctx *ctx, off_t *already_hashed_to,
-			       int fd, size_t size, const char *path,
+			       struct bulk_checkin_source *source,
 			       unsigned flags)
 {
 	git_zstream s;
@@ -167,22 +200,28 @@ static int stream_blob_to_pack(struct bulk_checkin_packfile *state,
 	int status = Z_OK;
 	int write_object = (flags & HASH_WRITE_OBJECT);
 	off_t offset = 0;
+	size_t size = source->size;
 
 	git_deflate_init(&s, pack_compression_level);
 
-	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), OBJ_BLOB, size);
+	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), OBJ_BLOB,
+					      size);
 	s.next_out = obuf + hdrlen;
 	s.avail_out = sizeof(obuf) - hdrlen;
 
 	while (status != Z_STREAM_END) {
 		if (size && !s.avail_in) {
 			ssize_t rsize = size < sizeof(ibuf) ? size : sizeof(ibuf);
-			ssize_t read_result = read_in_full(fd, ibuf, rsize);
+			ssize_t read_result;
+
+			read_result = bulk_checkin_source_read(source, ibuf,
+							       rsize);
 			if (read_result < 0)
-				die_errno("failed to read from '%s'", path);
+				die_errno("failed to read from '%s'",
+					  source->path);
 			if (read_result != rsize)
 				die("failed to read %d bytes from '%s'",
-				    (int)rsize, path);
+				    (int)rsize, source->path);
 			offset += rsize;
 			if (*already_hashed_to < offset) {
 				size_t hsize = offset - *already_hashed_to;
@@ -325,6 +364,12 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	git_hash_ctx ctx;
 	struct hashfile_checkpoint checkpoint = {0};
 	struct pack_idx_entry *idx = NULL;
+	struct bulk_checkin_source source = {
+		.type = SOURCE_FILE,
+		.fd = fd,
+		.size = size,
+		.path = path,
+	};
 
 	seekback = lseek(fd, 0, SEEK_CUR);
 	if (seekback == (off_t) -1)
@@ -342,10 +387,10 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 	while (1) {
 		prepare_checkpoint(state, &checkpoint, idx, flags);
 		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
-					 fd, size, path, flags))
+					 &source, flags))
 			break;
 		truncate_checkpoint(state, &checkpoint, idx);
-		if (lseek(fd, seekback, SEEK_SET) == (off_t) -1)
+		if (bulk_checkin_source_seek_to(&source, seekback) == (off_t)-1)
 			return error("cannot seek back");
 	}
 	finalize_checkpoint(state, &ctx, &checkpoint, idx, result_oid);
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 06/10] bulk-checkin: implement `SOURCE_INCORE` mode for `bulk_checkin_source`

[Taylor Blau]

Continue to prepare for streaming an object's contents directly from
memory by teaching `bulk_checkin_source` how to perform reads and seeks
based on an address in memory.

Unlike file descriptors, which manage their own offset internally, we
have to keep track of how many bytes we've read out of the buffer, and
make sure we don't read past the end of the buffer.

Suggested-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index fc1d902018..133e02ce36 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -141,11 +141,15 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
 }
 
 struct bulk_checkin_source {
-	enum { SOURCE_FILE } type;
+	enum { SOURCE_FILE, SOURCE_INCORE } type;
 
 	/* SOURCE_FILE fields */
 	int fd;
 
+	/* SOURCE_INCORE fields */
+	const void *buf;
+	size_t read;
+
 	/* common fields */
 	size_t size;
 	const char *path;
@@ -157,6 +161,11 @@ static off_t bulk_checkin_source_seek_to(struct bulk_checkin_source *source,
 	switch (source->type) {
 	case SOURCE_FILE:
 		return lseek(source->fd, offset, SEEK_SET);
+	case SOURCE_INCORE:
+		if (!(0 <= offset && offset < source->size))
+			return (off_t)-1;
+		source->read = offset;
+		return source->read;
 	default:
 		BUG("unknown bulk-checkin source: %d", source->type);
 	}
@@ -168,6 +177,13 @@ static ssize_t bulk_checkin_source_read(struct bulk_checkin_source *source,
 	switch (source->type) {
 	case SOURCE_FILE:
 		return read_in_full(source->fd, buf, nr);
+	case SOURCE_INCORE:
+		assert(source->read <= source->size);
+		if (nr > source->size - source->read)
+			nr = source->size - source->read;
+		memcpy(buf, (unsigned char *)source->buf + source->read, nr);
+		source->read += nr;
+		return nr;
 	default:
 		BUG("unknown bulk-checkin source: %d", source->type);
 	}
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 07/10] bulk-checkin: generify `stream_blob_to_pack()` for arbitrary types

[Taylor Blau]

The existing `stream_blob_to_pack()` function is named based on the fact
that it knows only how to stream blobs into a bulk-checkin pack.

But there is no longer anything in this function which prevents us from
writing objects of arbitrary types to the bulk-checkin pack. Prepare to
write OBJ_TREEs by removing this assumption, adding an `enum
object_type` parameter to this function's argument list, and renaming it
to `stream_obj_to_pack()` accordingly.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 15 +++++++--------
 1 file changed, 7 insertions(+), 8 deletions(-)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 133e02ce36..f0115efb2e 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -204,10 +204,10 @@ static ssize_t bulk_checkin_source_read(struct bulk_checkin_source *source,
  * status before calling us just in case we ask it to call us again
  * with a new pack.
  */
-static int stream_blob_to_pack(struct bulk_checkin_packfile *state,
-			       git_hash_ctx *ctx, off_t *already_hashed_to,
-			       struct bulk_checkin_source *source,
-			       unsigned flags)
+static int stream_obj_to_pack(struct bulk_checkin_packfile *state,
+			      git_hash_ctx *ctx, off_t *already_hashed_to,
+			      struct bulk_checkin_source *source,
+			      enum object_type type, unsigned flags)
 {
 	git_zstream s;
 	unsigned char ibuf[16384];
@@ -220,8 +220,7 @@ static int stream_blob_to_pack(struct bulk_checkin_packfile *state,
 
 	git_deflate_init(&s, pack_compression_level);
 
-	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), OBJ_BLOB,
-					      size);
+	hdrlen = encode_in_pack_object_header(obuf, sizeof(obuf), type, size);
 	s.next_out = obuf + hdrlen;
 	s.avail_out = sizeof(obuf) - hdrlen;
 
@@ -402,8 +401,8 @@ static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 
 	while (1) {
 		prepare_checkpoint(state, &checkpoint, idx, flags);
-		if (!stream_blob_to_pack(state, &ctx, &already_hashed_to,
-					 &source, flags))
+		if (!stream_obj_to_pack(state, &ctx, &already_hashed_to,
+					&source, OBJ_BLOB, flags))
 			break;
 		truncate_checkpoint(state, &checkpoint, idx);
 		if (bulk_checkin_source_seek_to(&source, seekback) == (off_t)-1)
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 08/10] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Taylor Blau]

Now that we have factored out many of the common routines necessary to
index a new object into a pack created by the bulk-checkin machinery, we
can introduce a variant of `index_blob_bulk_checkin()` that acts on
blobs whose contents we can fit in memory.

This will be useful in a couple of more commits in order to provide the
`merge-tree` builtin with a mechanism to create a new pack containing
any objects it created during the merge, instead of storing those
objects individually as loose.

Similar to the existing `index_blob_bulk_checkin()` function, the
entrypoint delegates to `deflate_blob_to_pack_incore()`, which is
responsible for formatting the pack header and then deflating the
contents into the pack. The latter is accomplished by calling
deflate_obj_contents_to_pack_incore(), which takes advantage of the
earlier refactorings and is responsible for writing the object to the
pack and handling any overage from pack.packSizeLimit.

The bulk of the new functionality is implemented in the function
`stream_obj_to_pack()`, which can handle streaming objects from memory
to the bulk-checkin pack as a result of the earlier refactoring.

Consistent with the rest of the bulk-checkin mechanism, there are no
direct tests here. In future commits when we expose this new
functionality via the `merge-tree` builtin, we will test it indirectly
there.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 64 ++++++++++++++++++++++++++++++++++++++++++++++++++
 bulk-checkin.h |  4 ++++
 2 files changed, 68 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index f0115efb2e..9ae43648ba 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -370,6 +370,59 @@ static void finalize_checkpoint(struct bulk_checkin_packfile *state,
 	}
 }
 
+static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
+					       git_hash_ctx *ctx,
+					       struct hashfile_checkpoint *checkpoint,
+					       struct object_id *result_oid,
+					       const void *buf, size_t size,
+					       enum object_type type,
+					       const char *path, unsigned flags)
+{
+	struct pack_idx_entry *idx = NULL;
+	off_t already_hashed_to = 0;
+	struct bulk_checkin_source source = {
+		.type = SOURCE_INCORE,
+		.buf = buf,
+		.size = size,
+		.read = 0,
+		.path = path,
+	};
+
+	/* Note: idx is non-NULL when we are writing */
+	if (flags & HASH_WRITE_OBJECT)
+		CALLOC_ARRAY(idx, 1);
+
+	while (1) {
+		prepare_checkpoint(state, checkpoint, idx, flags);
+
+		if (!stream_obj_to_pack(state, ctx, &already_hashed_to, &source,
+					type, flags))
+			break;
+		truncate_checkpoint(state, checkpoint, idx);
+		bulk_checkin_source_seek_to(&source, 0);
+	}
+
+	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
+
+	return 0;
+}
+
+static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+	struct hashfile_checkpoint checkpoint = {0};
+
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
+				  size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
+						   result_oid, buf, size,
+						   OBJ_BLOB, path, flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -456,6 +509,17 @@ int index_blob_bulk_checkin(struct object_id *oid,
 	return status;
 }
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_blob_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index aa7286a7b3..1b91daeaee 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -13,6 +13,10 @@ int index_blob_bulk_checkin(struct object_id *oid,
 			    int fd, size_t size,
 			    const char *path, unsigned flags);
 
+int index_blob_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 09/10] bulk-checkin: introduce `index_tree_bulk_checkin_incore()`

[Taylor Blau]

The remaining missing piece in order to teach the `merge-tree` builtin
how to write the contents of a merge into a pack is a function to index
tree objects into a bulk-checkin pack.

This patch implements that missing piece, which is a thin wrapper around
all of the functionality introduced in previous commits.

If and when Git gains support for a "compatibility" hash algorithm, the
changes to support that here will be minimal. The bulk-checkin machinery
will need to convert the incoming tree to compute its length under the
compatibility hash, necessary to reconstruct its header. With that
information (and the converted contents of the tree), the bulk-checkin
machinery will have enough to keep track of the converted object's hash
in order to update the compatibility mapping.

Within `deflate_tree_to_pack_incore()`, the changes should be limited
to something like:

    struct strbuf converted = STRBUF_INIT;
    if (the_repository->compat_hash_algo) {
      if (convert_object_file(&compat_obj,
                              the_repository->hash_algo,
                              the_repository->compat_hash_algo, ...) < 0)
        die(...);

      format_object_header_hash(the_repository->compat_hash_algo,
                                OBJ_TREE, size);
    }
    /* compute the converted tree's hash using the compat algorithm */
    strbuf_release(&converted);

, assuming related changes throughout the rest of the bulk-checkin
machinery necessary to update the hash of the converted object, which
are likewise minimal in size.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bulk-checkin.c | 27 +++++++++++++++++++++++++++
 bulk-checkin.h |  4 ++++
 2 files changed, 31 insertions(+)

diff --git a/bulk-checkin.c b/bulk-checkin.c
index 9ae43648ba..d088a9c10b 100644
--- a/bulk-checkin.c
+++ b/bulk-checkin.c
@@ -423,6 +423,22 @@ static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
 						   OBJ_BLOB, path, flags);
 }
 
+static int deflate_tree_to_pack_incore(struct bulk_checkin_packfile *state,
+				       struct object_id *result_oid,
+				       const void *buf, size_t size,
+				       const char *path, unsigned flags)
+{
+	git_hash_ctx ctx;
+	struct hashfile_checkpoint checkpoint = {0};
+
+	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_TREE,
+				  size);
+
+	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
+						   result_oid, buf, size,
+						   OBJ_TREE, path, flags);
+}
+
 static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
 				struct object_id *result_oid,
 				int fd, size_t size,
@@ -520,6 +536,17 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 	return status;
 }
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags)
+{
+	int status = deflate_tree_to_pack_incore(&bulk_checkin_packfile, oid,
+						 buf, size, path, flags);
+	if (!odb_transaction_nesting)
+		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
+	return status;
+}
+
 void begin_odb_transaction(void)
 {
 	odb_transaction_nesting += 1;
diff --git a/bulk-checkin.h b/bulk-checkin.h
index 1b91daeaee..89786b3954 100644
--- a/bulk-checkin.h
+++ b/bulk-checkin.h
@@ -17,6 +17,10 @@ int index_blob_bulk_checkin_incore(struct object_id *oid,
 				   const void *buf, size_t size,
 				   const char *path, unsigned flags);
 
+int index_tree_bulk_checkin_incore(struct object_id *oid,
+				   const void *buf, size_t size,
+				   const char *path, unsigned flags);
+
 /*
  * Tell the object database to optimize for adding
  * multiple objects. end_odb_transaction must be called
-- 
2.42.0.408.g97fac66ae4

[PATCH v3 10/10] builtin/merge-tree.c: implement support for `--write-pack`

[Taylor Blau]

When using merge-tree often within a repository[^1], it is possible to
generate a relatively large number of loose objects, which can result in
degraded performance, and inode exhaustion in extreme cases.

Building on the functionality introduced in previous commits, the
bulk-checkin machinery now has support to write arbitrary blob and tree
objects which are small enough to be held in-core. We can use this to
write any blob/tree objects generated by ORT into a separate pack
instead of writing them out individually as loose.

This functionality is gated behind a new `--write-pack` option to
`merge-tree` that works with the (non-deprecated) `--write-tree` mode.

The implementation is relatively straightforward. There are two spots
within the ORT mechanism where we call `write_object_file()`, one for
content differences within blobs, and another to assemble any new trees
necessary to construct the merge. In each of those locations,
conditionally replace calls to `write_object_file()` with
`index_blob_bulk_checkin_incore()` or `index_tree_bulk_checkin_incore()`
depending on which kind of object we are writing.

The only remaining task is to begin and end the transaction necessary to
initialize the bulk-checkin machinery, and move any new pack(s) it
created into the main object store.

[^1]: Such is the case at GitHub, where we run presumptive "test merges"
  on open pull requests to see whether or not we can light up the merge
  button green depending on whether or not the presumptive merge was
  conflicted.

  This is done in response to a number of user-initiated events,
  including viewing an open pull request whose last test merge is stale
  with respect to the current base and tip of the pull request. As a
  result, merge-tree can be run very frequently on large, active
  repositories.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/git-merge-tree.txt |  4 ++
 builtin/merge-tree.c             |  5 ++
 merge-ort.c                      | 42 +++++++++++----
 merge-recursive.h                |  1 +
 t/t4301-merge-tree-write-tree.sh | 93 ++++++++++++++++++++++++++++++++
 5 files changed, 136 insertions(+), 9 deletions(-)

diff --git a/Documentation/git-merge-tree.txt b/Documentation/git-merge-tree.txt
index ffc4fbf7e8..9d37609ef1 100644
--- a/Documentation/git-merge-tree.txt
+++ b/Documentation/git-merge-tree.txt
@@ -69,6 +69,10 @@ OPTIONS
 	specify a merge-base for the merge, and specifying multiple bases is
 	currently not supported. This option is incompatible with `--stdin`.
 
+--write-pack::
+	Write any new objects into a separate packfile instead of as
+	individual loose objects.
+
 [[OUTPUT]]
 OUTPUT
 ------
diff --git a/builtin/merge-tree.c b/builtin/merge-tree.c
index 0de42aecf4..672ebd4c54 100644
--- a/builtin/merge-tree.c
+++ b/builtin/merge-tree.c
@@ -18,6 +18,7 @@
 #include "quote.h"
 #include "tree.h"
 #include "config.h"
+#include "bulk-checkin.h"
 
 static int line_termination = '\n';
 
@@ -414,6 +415,7 @@ struct merge_tree_options {
 	int show_messages;
 	int name_only;
 	int use_stdin;
+	int write_pack;
 };
 
 static int real_merge(struct merge_tree_options *o,
@@ -440,6 +442,7 @@ static int real_merge(struct merge_tree_options *o,
 	init_merge_options(&opt, the_repository);
 
 	opt.show_rename_progress = 0;
+	opt.write_pack = o->write_pack;
 
 	opt.branch1 = branch1;
 	opt.branch2 = branch2;
@@ -548,6 +551,8 @@ int cmd_merge_tree(int argc, const char **argv, const char *prefix)
 			   &merge_base,
 			   N_("commit"),
 			   N_("specify a merge-base for the merge")),
+		OPT_BOOL(0, "write-pack", &o.write_pack,
+			 N_("write new objects to a pack instead of as loose")),
 		OPT_END()
 	};
 
diff --git a/merge-ort.c b/merge-ort.c
index 7857ce9fbd..e198d2bc2b 100644
--- a/merge-ort.c
+++ b/merge-ort.c
@@ -48,6 +48,7 @@
 #include "tree.h"
 #include "unpack-trees.h"
 #include "xdiff-interface.h"
+#include "bulk-checkin.h"
 
 /*
  * We have many arrays of size 3.  Whenever we have such an array, the
@@ -2107,10 +2108,19 @@ static int handle_content_merge(struct merge_options *opt,
 		if ((merge_status < 0) || !result_buf.ptr)
 			ret = error(_("failed to execute internal merge"));
 
-		if (!ret &&
-		    write_object_file(result_buf.ptr, result_buf.size,
-				      OBJ_BLOB, &result->oid))
-			ret = error(_("unable to add %s to database"), path);
+		if (!ret) {
+			ret = opt->write_pack
+				? index_blob_bulk_checkin_incore(&result->oid,
+								 result_buf.ptr,
+								 result_buf.size,
+								 path, 1)
+				: write_object_file(result_buf.ptr,
+						    result_buf.size,
+						    OBJ_BLOB, &result->oid);
+			if (ret)
+				ret = error(_("unable to add %s to database"),
+					    path);
+		}
 
 		free(result_buf.ptr);
 		if (ret)
@@ -3596,7 +3606,8 @@ static int tree_entry_order(const void *a_, const void *b_)
 				 b->string, strlen(b->string), bmi->result.mode);
 }
 
-static int write_tree(struct object_id *result_oid,
+static int write_tree(struct merge_options *opt,
+		      struct object_id *result_oid,
 		      struct string_list *versions,
 		      unsigned int offset,
 		      size_t hash_size)
@@ -3630,8 +3641,14 @@ static int write_tree(struct object_id *result_oid,
 	}
 
 	/* Write this object file out, and record in result_oid */
-	if (write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid))
+	ret = opt->write_pack
+		? index_tree_bulk_checkin_incore(result_oid,
+						 buf.buf, buf.len, "", 1)
+		: write_object_file(buf.buf, buf.len, OBJ_TREE, result_oid);
+
+	if (ret)
 		ret = -1;
+
 	strbuf_release(&buf);
 	return ret;
 }
@@ -3796,8 +3813,8 @@ static int write_completed_directory(struct merge_options *opt,
 		 */
 		dir_info->is_null = 0;
 		dir_info->result.mode = S_IFDIR;
-		if (write_tree(&dir_info->result.oid, &info->versions, offset,
-			       opt->repo->hash_algo->rawsz) < 0)
+		if (write_tree(opt, &dir_info->result.oid, &info->versions,
+			       offset, opt->repo->hash_algo->rawsz) < 0)
 			ret = -1;
 	}
 
@@ -4331,9 +4348,13 @@ static int process_entries(struct merge_options *opt,
 		fflush(stdout);
 		BUG("dir_metadata accounting completely off; shouldn't happen");
 	}
-	if (write_tree(result_oid, &dir_metadata.versions, 0,
+	if (write_tree(opt, result_oid, &dir_metadata.versions, 0,
 		       opt->repo->hash_algo->rawsz) < 0)
 		ret = -1;
+
+	if (opt->write_pack)
+		end_odb_transaction();
+
 cleanup:
 	string_list_clear(&plist, 0);
 	string_list_clear(&dir_metadata.versions, 0);
@@ -4877,6 +4898,9 @@ static void merge_start(struct merge_options *opt, struct merge_result *result)
 	 */
 	strmap_init(&opt->priv->conflicts);
 
+	if (opt->write_pack)
+		begin_odb_transaction();
+
 	trace2_region_leave("merge", "allocate/init", opt->repo);
 }
 
diff --git a/merge-recursive.h b/merge-recursive.h
index b88000e3c2..156e160876 100644
--- a/merge-recursive.h
+++ b/merge-recursive.h
@@ -48,6 +48,7 @@ struct merge_options {
 	unsigned renormalize : 1;
 	unsigned record_conflict_msgs_as_headers : 1;
 	const char *msg_header_prefix;
+	unsigned write_pack : 1;
 
 	/* internal fields used by the implementation */
 	struct merge_options_internal *priv;
diff --git a/t/t4301-merge-tree-write-tree.sh b/t/t4301-merge-tree-write-tree.sh
index 250f721795..2d81ff4de5 100755
--- a/t/t4301-merge-tree-write-tree.sh
+++ b/t/t4301-merge-tree-write-tree.sh
@@ -922,4 +922,97 @@ test_expect_success 'check the input format when --stdin is passed' '
 	test_cmp expect actual
 '
 
+packdir=".git/objects/pack"
+
+test_expect_success 'merge-tree can pack its result with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+
+	# base has lines [3, 4, 5]
+	#   - side adds to the beginning, resulting in [1, 2, 3, 4, 5]
+	#   - other adds to the end, resulting in [3, 4, 5, 6, 7]
+	#
+	# merging the two should result in a new blob object containing
+	# [1, 2, 3, 4, 5, 6, 7], along with a new tree.
+	test_commit -C repo base file "$(test_seq 3 5)" &&
+	git -C repo branch -M main &&
+	git -C repo checkout -b side main &&
+	test_commit -C repo side file "$(test_seq 1 5)" &&
+	git -C repo checkout -b other main &&
+	test_commit -C repo other file "$(test_seq 3 7)" &&
+
+	find repo/$packdir -type f -name "pack-*.idx" >packs.before &&
+	tree="$(git -C repo merge-tree --write-pack \
+		refs/tags/side refs/tags/other)" &&
+	blob="$(git -C repo rev-parse $tree:file)" &&
+	find repo/$packdir -type f -name "pack-*.idx" >packs.after &&
+
+	test_must_be_empty packs.before &&
+	test_line_count = 1 packs.after &&
+
+	git show-index <$(cat packs.after) >objects &&
+	test_line_count = 2 objects &&
+	grep "^[1-9][0-9]* $tree" objects &&
+	grep "^[1-9][0-9]* $blob" objects
+'
+
+test_expect_success 'merge-tree can write multiple packs with --write-pack' '
+	test_when_finished "rm -rf repo" &&
+	git init repo &&
+	(
+		cd repo &&
+
+		git config pack.packSizeLimit 512 &&
+
+		test_seq 512 >f &&
+
+		# "f" contains roughly ~2,000 bytes.
+		#
+		# Each side ("foo" and "bar") adds a small amount of data at the
+		# beginning and end of "base", respectively.
+		git add f &&
+		test_tick &&
+		git commit -m base &&
+		git branch -M main &&
+
+		git checkout -b foo main &&
+		{
+			echo foo && cat f
+		} >f.tmp &&
+		mv f.tmp f &&
+		git add f &&
+		test_tick &&
+		git commit -m foo &&
+
+		git checkout -b bar main &&
+		echo bar >>f &&
+		git add f &&
+		test_tick &&
+		git commit -m bar &&
+
+		find $packdir -type f -name "pack-*.idx" >packs.before &&
+		# Merging either side should result in a new object which is
+		# larger than 1M, thus the result should be split into two
+		# separate packs.
+		tree="$(git merge-tree --write-pack \
+			refs/heads/foo refs/heads/bar)" &&
+		blob="$(git rev-parse $tree:f)" &&
+		find $packdir -type f -name "pack-*.idx" >packs.after &&
+
+		test_must_be_empty packs.before &&
+		test_line_count = 2 packs.after &&
+		for idx in $(cat packs.after)
+		do
+			git show-index <$idx || return 1
+		done >objects &&
+
+		# The resulting set of packs should contain one copy of both
+		# objects, each in a separate pack.
+		test_line_count = 2 objects &&
+		grep "^[1-9][0-9]* $tree" objects &&
+		grep "^[1-9][0-9]* $blob" objects
+
+	)
+'
+
 test_done
-- 
2.42.0.408.g97fac66ae4

[PATCH v4 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[Taylor Blau]

(Rebased onto the tip of 'master', which is 3a06386e31 (The fifteenth
batch, 2023-10-04), at the time of writing).

This series is a reroll of the combined efforts of [1] and [2] to
introduce the v2 changed-path Bloom filters, which fixes a bug in our
existing implementation of murmur3 paths with non-ASCII characters (when
the "char" type is signed).

In large part, this is the same as the previous round. But this round
includes some extra bits that address issues pointed out by SZEDER
Gábor, which are:

  - not reading Bloom filters for root commits
  - corrupting Bloom filter reads by tweaking the filter settings
    between layers.

These issues were discussed in (among other places) [3], and [4],
respectively.

Thanks to Jonathan, Peff, and SZEDER who have helped a great deal in
assembling these patches. As usual, a range-diff is included below.
Thanks in advance for your
review!

[1]: https://lore.kernel.org/git/cover.1684790529.git.jonathantanmy@google.com/
[2]: https://lore.kernel.org/git/cover.1691426160.git.me@ttaylorr.com/
[3]: https://public-inbox.org/git/20201015132147.GB24954@szeder.dev/
[4]: https://lore.kernel.org/git/20230830200218.GA5147@szeder.dev/

Jonathan Tan (4):
  gitformat-commit-graph: describe version 2 of BDAT
  t4216: test changed path filters with high bit paths
  repo-settings: introduce commitgraph.changedPathsVersion
  commit-graph: new filter ver. that fixes murmur3

Taylor Blau (13):
  t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`
  revision.c: consult Bloom filters for root commits
  commit-graph: ensure Bloom filters are read with consistent settings
  t/helper/test-read-graph.c: extract `dump_graph_info()`
  bloom.h: make `load_bloom_filter_from_graph()` public
  t/helper/test-read-graph: implement `bloom-filters` mode
  bloom: annotate filters with hash version
  bloom: prepare to discard incompatible Bloom filters
  commit-graph.c: unconditionally load Bloom filters
  commit-graph: drop unnecessary `graph_read_bloom_data_context`
  object.h: fix mis-aligned flag bits table
  commit-graph: reuse existing Bloom filters where possible
  bloom: introduce `deinit_bloom_filters()`

 Documentation/config/commitgraph.txt     |  26 ++-
 Documentation/gitformat-commit-graph.txt |   9 +-
 bloom.c                                  | 208 ++++++++++++++++-
 bloom.h                                  |  38 ++-
 commit-graph.c                           |  61 ++++-
 object.h                                 |   3 +-
 oss-fuzz/fuzz-commit-graph.c             |   2 +-
 repo-settings.c                          |   6 +-
 repository.h                             |   2 +-
 revision.c                               |  26 ++-
 t/helper/test-bloom.c                    |   9 +-
 t/helper/test-read-graph.c               |  67 ++++--
 t/t0095-bloom.sh                         |   8 +
 t/t4216-log-bloom.sh                     | 282 ++++++++++++++++++++++-
 14 files changed, 692 insertions(+), 55 deletions(-)

Range-diff against v3:
 1:  fe671d616c =  1:  e0fc51c3fb t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`
 2:  7d0fa93543 =  2:  87b09e6266 revision.c: consult Bloom filters for root commits
 3:  2ecc0a2d58 !  3:  46d8a41005 commit-graph: ensure Bloom filters are read with consistent settings
    @@ t/t4216-log-bloom.sh: test_expect_success 'Bloom generation backfills empty comm
     +	done
     +'
     +
    -+test_expect_success 'split' '
    ++test_expect_success 'ensure incompatible Bloom filters are ignored' '
     +	# Compute Bloom filters with "unusual" settings.
     +	git -C $repo rev-parse one >in &&
     +	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
    @@ t/t4216-log-bloom.sh: test_expect_success 'Bloom generation backfills empty comm
     +
     +test_expect_success 'merge graph layers with incompatible Bloom settings' '
     +	# Ensure that incompatible Bloom filters are ignored when
    -+	# generating new layers.
    ++	# merging existing layers.
     +	git -C $repo commit-graph write --reachable --changed-paths 2>err &&
     +	grep "disabling Bloom filters for commit-graph layer .$layer." err &&
     +
     +	test_path_is_file $repo/$graph &&
     +	test_dir_is_empty $repo/$graphdir &&
     +
    -+	# ...and merging existing ones.
    -+	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- file \
    -+		>expect 2>err &&
    -+	GIT_TRACE2_PERF="$(pwd)/trace.perf" \
    ++	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- \
    ++		file >expect &&
    ++	trace_out="$(pwd)/trace.perf" &&
    ++	GIT_TRACE2_PERF="$trace_out" \
     +		git -C $repo log --oneline --no-decorate -- file >actual 2>err &&
     +
    -+	test_cmp expect actual && cat err &&
    -+	grep "statistics:{\"filter_not_present\":0" trace.perf &&
    -+	! grep "disabling Bloom filters" err
    ++	test_cmp expect actual &&
    ++	grep "statistics:{\"filter_not_present\":0," trace.perf &&
    ++	test_must_be_empty err
     +'
     +
      test_done
 4:  17703ed89a =  4:  4d0190a992 gitformat-commit-graph: describe version 2 of BDAT
 5:  94552abf45 =  5:  3c2057c11c t/helper/test-read-graph.c: extract `dump_graph_info()`
 6:  3d81efa27b =  6:  e002e35004 bloom.h: make `load_bloom_filter_from_graph()` public
 7:  d23cd89037 =  7:  c7016f51cd t/helper/test-read-graph: implement `bloom-filters` mode
 8:  cba766f224 !  8:  cef2aac8ba t4216: test changed path filters with high bit paths
    @@ Commit message
     
      ## t/t4216-log-bloom.sh ##
     @@ t/t4216-log-bloom.sh: test_expect_success 'merge graph layers with incompatible Bloom settings' '
    - 	! grep "disabling Bloom filters" err
    + 	test_must_be_empty err
      '
      
     +get_first_changed_path_filter () {
    @@ t/t4216-log-bloom.sh: test_expect_success 'merge graph layers with incompatible
     +	(
     +		cd highbit1 &&
     +		echo "52a9" >expect &&
    -+		get_first_changed_path_filter >actual &&
    -+		test_cmp expect actual
    ++		get_first_changed_path_filter >actual
     +	)
     +'
     +
 9:  a08a961f41 =  9:  36d4e2202e repo-settings: introduce commitgraph.changedPathsVersion
10:  61d44519a5 ! 10:  f6ab427ead commit-graph: new filter ver. that fixes murmur3
    @@ t/t4216-log-bloom.sh: test_expect_success 'version 1 changed-path used when vers
     +	test_commit -C doublewrite c "$CENT" &&
     +	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
     +	git -C doublewrite commit-graph write --reachable --changed-paths &&
    ++	for v in -2 3
    ++	do
    ++		git -C doublewrite config --add commitgraph.changedPathsVersion $v &&
    ++		git -C doublewrite commit-graph write --reachable --changed-paths 2>err &&
    ++		cat >expect <<-EOF &&
    ++		warning: attempting to write a commit-graph, but ${SQ}commitgraph.changedPathsVersion${SQ} ($v) is not supported
    ++		EOF
    ++		test_cmp expect err || return 1
    ++	done &&
     +	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
     +	git -C doublewrite commit-graph write --reachable --changed-paths &&
     +	(
11:  a8c10f8de8 = 11:  dc69b28329 bloom: annotate filters with hash version
12:  2ba10a4b4b = 12:  85dbdc4ed2 bloom: prepare to discard incompatible Bloom filters
13:  09d8669c3a = 13:  3ff669a622 commit-graph.c: unconditionally load Bloom filters
14:  0d4f9dc4ee = 14:  1c78e3d178 commit-graph: drop unnecessary `graph_read_bloom_data_context`
15:  1f7f27bc47 = 15:  a289514faa object.h: fix mis-aligned flag bits table
16:  abbef95ae8 ! 16:  6a12e39e7f commit-graph: reuse existing Bloom filters where possible
    @@ t/t4216-log-bloom.sh: test_expect_success 'when writing another commit graph, pr
      	test_commit -C doublewrite c "$CENT" &&
     +
      	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
    --	git -C doublewrite commit-graph write --reachable --changed-paths &&
     +	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
     +		git -C doublewrite commit-graph write --reachable --changed-paths &&
     +	test_filter_computed 1 trace2.txt &&
     +	test_filter_upgraded 0 trace2.txt &&
    ++
    + 	git -C doublewrite commit-graph write --reachable --changed-paths &&
    + 	for v in -2 3
    + 	do
    +@@ t/t4216-log-bloom.sh: test_expect_success 'when writing commit graph, do not reuse changed-path of ano
    + 		EOF
    + 		test_cmp expect err || return 1
    + 	done &&
     +
      	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
     -	git -C doublewrite commit-graph write --reachable --changed-paths &&
17:  ca362408d5 ! 17:  8942f205c8 bloom: introduce `deinit_bloom_filters()`
    @@ bloom.h: void add_key_to_filter(const struct bloom_key *key,
      	BLOOM_NOT_COMPUTED = (1 << 0),
     
      ## commit-graph.c ##
    -@@ commit-graph.c: static void close_commit_graph_one(struct commit_graph *g)
    +@@ commit-graph.c: struct bloom_filter_settings *get_bloom_filter_settings(struct repository *r)
      void close_commit_graph(struct raw_object_store *o)
      {
    - 	close_commit_graph_one(o->commit_graph);
    + 	clear_commit_graph_data_slab(&commit_graph_data_slab);
     +	deinit_bloom_filters();
    + 	free_commit_graph(o->commit_graph);
      	o->commit_graph = NULL;
      }
    - 
     @@ commit-graph.c: int write_commit_graph(struct object_directory *odb,
      
      	res = write_commit_graph_file(ctx);
-- 
2.42.0.415.g8942f205c8

[PATCH v4 01/17] t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`

[Taylor Blau]

The existing implementation of test_bloom_filters_not_used() asserts
that the Bloom filter sub-system has not been initialized at all, by
checking for the absence of any data from it from trace2.

In the following commit, it will become possible to load Bloom filters
without using them (e.g., because `commitGraph.changedPathVersion` is
incompatible with the hash version with which the commit-graph's Bloom
filters were written).

When this is the case, it's possible to initialize the Bloom filter
sub-system, while still not using any Bloom filters. When this is the
case, check that the data dump from the Bloom sub-system is all zeros,
indicating that no filters were used.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/t4216-log-bloom.sh | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index fa9d32facf..487fc3d6b9 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -81,7 +81,19 @@ test_bloom_filters_used () {
 test_bloom_filters_not_used () {
 	log_args=$1
 	setup "$log_args" &&
-	! grep -q "statistics:{\"filter_not_present\":" "$TRASH_DIRECTORY/trace.perf" &&
+
+	if grep -q "statistics:{\"filter_not_present\":" "$TRASH_DIRECTORY/trace.perf"
+	then
+		# if the Bloom filter system is initialized, ensure that no
+		# filters were used
+		data="statistics:{"
+		data="$data\"filter_not_present\":0,"
+		data="$data\"maybe\":0,"
+		data="$data\"definitely_not\":0,"
+		data="$data\"false_positive\":0}"
+
+		grep -q "$data" "$TRASH_DIRECTORY/trace.perf"
+	fi &&
 	test_cmp log_wo_bloom log_w_bloom
 }
 
-- 
2.42.0.415.g8942f205c8

[PATCH v4 02/17] revision.c: consult Bloom filters for root commits

[Taylor Blau]

The commit-graph stores changed-path Bloom filters which represent the
set of paths included in a tree-level diff between a commit's root tree
and that of its parent.

When a commit has no parents, the tree-diff is computed against that
commit's root tree and the empty tree. In other words, every path in
that commit's tree is stored in the Bloom filter (since they all appear
in the diff).

Consult these filters during pathspec-limited traversals in the function
`rev_same_tree_as_empty()`. Doing so yields a performance improvement
where we can avoid enumerating the full set of paths in a parentless
commit's root tree when we know that the path(s) of interest were not
listed in that commit's changed-path Bloom filter.

Suggested-by: SZEDER Gábor <szeder.dev@gmail.com>
Original-patch-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 revision.c           | 26 ++++++++++++++++++++++----
 t/t4216-log-bloom.sh |  8 ++++++--
 2 files changed, 28 insertions(+), 6 deletions(-)

diff --git a/revision.c b/revision.c
index 219dc76716..6e9da518d9 100644
--- a/revision.c
+++ b/revision.c
@@ -834,17 +834,28 @@ static int rev_compare_tree(struct rev_info *revs,
 	return tree_difference;
 }
 
-static int rev_same_tree_as_empty(struct rev_info *revs, struct commit *commit)
+static int rev_same_tree_as_empty(struct rev_info *revs, struct commit *commit,
+				  int nth_parent)
 {
 	struct tree *t1 = repo_get_commit_tree(the_repository, commit);
+	int bloom_ret = 1;
 
 	if (!t1)
 		return 0;
 
+	if (nth_parent == 1 && revs->bloom_keys_nr) {
+		bloom_ret = check_maybe_different_in_bloom_filter(revs, commit);
+		if (!bloom_ret)
+			return 1;
+	}
+
 	tree_difference = REV_TREE_SAME;
 	revs->pruning.flags.has_changes = 0;
 	diff_tree_oid(NULL, &t1->object.oid, "", &revs->pruning);
 
+	if (bloom_ret == 1 && tree_difference == REV_TREE_SAME)
+		count_bloom_filter_false_positive++;
+
 	return tree_difference == REV_TREE_SAME;
 }
 
@@ -882,7 +893,7 @@ static int compact_treesame(struct rev_info *revs, struct commit *commit, unsign
 		if (nth_parent != 0)
 			die("compact_treesame %u", nth_parent);
 		old_same = !!(commit->object.flags & TREESAME);
-		if (rev_same_tree_as_empty(revs, commit))
+		if (rev_same_tree_as_empty(revs, commit, nth_parent))
 			commit->object.flags |= TREESAME;
 		else
 			commit->object.flags &= ~TREESAME;
@@ -978,7 +989,14 @@ static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit)
 		return;
 
 	if (!commit->parents) {
-		if (rev_same_tree_as_empty(revs, commit))
+		/*
+		 * Pretend as if we are comparing ourselves to the
+		 * (non-existent) first parent of this commit object. Even
+		 * though no such parent exists, its changed-path Bloom filter
+		 * (if one exists) is relative to the empty tree, using Bloom
+		 * filters is allowed here.
+		 */
+		if (rev_same_tree_as_empty(revs, commit, 1))
 			commit->object.flags |= TREESAME;
 		return;
 	}
@@ -1059,7 +1077,7 @@ static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit)
 
 		case REV_TREE_NEW:
 			if (revs->remove_empty_trees &&
-			    rev_same_tree_as_empty(revs, p)) {
+			    rev_same_tree_as_empty(revs, p, nth_parent)) {
 				/* We are adding all the specified
 				 * paths from this parent, so the
 				 * history beyond this parent is not
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 487fc3d6b9..322640feeb 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -87,7 +87,11 @@ test_bloom_filters_not_used () {
 		# if the Bloom filter system is initialized, ensure that no
 		# filters were used
 		data="statistics:{"
-		data="$data\"filter_not_present\":0,"
+		# unusable filters (e.g., those computed with a
+		# different value of commitGraph.changedPathsVersion)
+		# are counted in the filter_not_present bucket, so any
+		# value is OK there.
+		data="$data\"filter_not_present\":[0-9][0-9]*,"
 		data="$data\"maybe\":0,"
 		data="$data\"definitely_not\":0,"
 		data="$data\"false_positive\":0}"
@@ -174,7 +178,7 @@ test_expect_success 'setup - add commit-graph to the chain with Bloom filters' '
 
 test_bloom_filters_used_when_some_filters_are_missing () {
 	log_args=$1
-	bloom_trace_prefix="statistics:{\"filter_not_present\":3,\"maybe\":6,\"definitely_not\":9"
+	bloom_trace_prefix="statistics:{\"filter_not_present\":3,\"maybe\":6,\"definitely_not\":10"
 	setup "$log_args" &&
 	grep -q "$bloom_trace_prefix" "$TRASH_DIRECTORY/trace.perf" &&
 	test_cmp log_wo_bloom log_w_bloom
-- 
2.42.0.415.g8942f205c8

[PATCH v4 03/17] commit-graph: ensure Bloom filters are read with consistent settings

[Taylor Blau]

The changed-path Bloom filter mechanism is parameterized by a couple of
variables, notably the number of bits per hash (typically "m" in Bloom
filter literature) and the number of hashes themselves (typically "k").

It is critically important that filters are read with the Bloom filter
settings that they were written with. Failing to do so would mean that
each query is liable to compute different fingerprints, meaning that the
filter itself could return a false negative. This goes against a basic
assumption of using Bloom filters (that they may return false positives,
but never false negatives) and can lead to incorrect results.

We have some existing logic to carry forward existing Bloom filter
settings from one layer to the next. In `write_commit_graph()`, we have
something like:

    if (!(flags & COMMIT_GRAPH_NO_WRITE_BLOOM_FILTERS)) {
        struct commit_graph *g = ctx->r->objects->commit_graph;

        /* We have changed-paths already. Keep them in the next graph */
        if (g && g->chunk_bloom_data) {
            ctx->changed_paths = 1;
            ctx->bloom_settings = g->bloom_filter_settings;
        }
    }

, which drags forward Bloom filter settings across adjacent layers.

This doesn't quite address all cases, however, since it is possible for
intermediate layers to contain no Bloom filters at all. For example,
suppose we have two layers in a commit-graph chain, say, {G1, G2}. If G1
contains Bloom filters, but G2 doesn't, a new G3 (whose base graph is
G2) may be written with arbitrary Bloom filter settings, because we only
check the immediately adjacent layer's settings for compatibility.

This behavior has existed since the introduction of changed-path Bloom
filters. But in practice, this is not such a big deal, since the only
way up until this point to modify the Bloom filter settings at write
time is with the undocumented environment variables:

  - GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY
  - GIT_TEST_BLOOM_SETTINGS_NUM_HASHES
  - GIT_TEST_BLOOM_SETTINGS_MAX_CHANGED_PATHS

(it is still possible to tweak MAX_CHANGED_PATHS between layers, but
this does not affect reads, so is allowed to differ across multiple
graph layers).

But in future commits, we will introduce another parameter to change the
hash algorithm used to compute Bloom fingerprints itself. This will be
exposed via a configuration setting, making this foot-gun easier to use.

To prevent this potential issue, validate that all layers of a split
commit-graph have compatible settings with the newest layer which
contains Bloom filters.

Reported-by: SZEDER Gábor <szeder.dev@gmail.com>
Original-test-by: SZEDER Gábor <szeder.dev@gmail.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c       | 25 +++++++++++++++++
 t/t4216-log-bloom.sh | 64 ++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 89 insertions(+)

diff --git a/commit-graph.c b/commit-graph.c
index fd2f700b2e..0ac79aff5a 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -498,6 +498,30 @@ static int validate_mixed_generation_chain(struct commit_graph *g)
 	return 0;
 }
 
+static void validate_mixed_bloom_settings(struct commit_graph *g)
+{
+	struct bloom_filter_settings *settings = NULL;
+	for (; g; g = g->base_graph) {
+		if (!g->bloom_filter_settings)
+			continue;
+		if (!settings) {
+			settings = g->bloom_filter_settings;
+			continue;
+		}
+
+		if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry ||
+		    g->bloom_filter_settings->num_hashes != settings->num_hashes) {
+			g->chunk_bloom_indexes = NULL;
+			g->chunk_bloom_data = NULL;
+			FREE_AND_NULL(g->bloom_filter_settings);
+
+			warning(_("disabling Bloom filters for commit-graph "
+				  "layer '%s' due to incompatible settings"),
+				oid_to_hex(&g->oid));
+		}
+	}
+}
+
 static int add_graph_to_chain(struct commit_graph *g,
 			      struct commit_graph *chain,
 			      struct object_id *oids,
@@ -616,6 +640,7 @@ struct commit_graph *load_commit_graph_chain_fd_st(struct repository *r,
 	}
 
 	validate_mixed_generation_chain(graph_chain);
+	validate_mixed_bloom_settings(graph_chain);
 
 	free(oids);
 	fclose(fp);
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 322640feeb..2ea5e90955 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -420,4 +420,68 @@ test_expect_success 'Bloom generation backfills empty commits' '
 	)
 '
 
+graph=.git/objects/info/commit-graph
+graphdir=.git/objects/info/commit-graphs
+chain=$graphdir/commit-graph-chain
+
+test_expect_success 'setup for mixed Bloom setting tests' '
+	repo=mixed-bloom-settings &&
+
+	git init $repo &&
+	for i in one two three
+	do
+		test_commit -C $repo $i file || return 1
+	done
+'
+
+test_expect_success 'ensure incompatible Bloom filters are ignored' '
+	# Compute Bloom filters with "unusual" settings.
+	git -C $repo rev-parse one >in &&
+	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
+		--stdin-commits --changed-paths --split <in &&
+	layer=$(head -n 1 $repo/$chain) &&
+
+	# A commit-graph layer without Bloom filters "hides" the layers
+	# below ...
+	git -C $repo rev-parse two >in &&
+	git -C $repo commit-graph write --stdin-commits --no-changed-paths \
+		--split=no-merge <in &&
+
+	# Another commit-graph layer that has Bloom filters, but with
+	# standard settings, and is thus incompatible with the base
+	# layer written above.
+	git -C $repo rev-parse HEAD >in &&
+	git -C $repo commit-graph write --stdin-commits --changed-paths \
+		--split=no-merge <in &&
+
+	test_line_count = 3 $repo/$chain &&
+
+	# Ensure that incompatible Bloom filters are ignored.
+	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- file \
+		>expect 2>err &&
+	git -C $repo log --oneline --no-decorate -- file >actual 2>err &&
+	test_cmp expect actual &&
+	grep "disabling Bloom filters for commit-graph layer .$layer." err
+'
+
+test_expect_success 'merge graph layers with incompatible Bloom settings' '
+	# Ensure that incompatible Bloom filters are ignored when
+	# merging existing layers.
+	git -C $repo commit-graph write --reachable --changed-paths 2>err &&
+	grep "disabling Bloom filters for commit-graph layer .$layer." err &&
+
+	test_path_is_file $repo/$graph &&
+	test_dir_is_empty $repo/$graphdir &&
+
+	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- \
+		file >expect &&
+	trace_out="$(pwd)/trace.perf" &&
+	GIT_TRACE2_PERF="$trace_out" \
+		git -C $repo log --oneline --no-decorate -- file >actual 2>err &&
+
+	test_cmp expect actual &&
+	grep "statistics:{\"filter_not_present\":0," trace.perf &&
+	test_must_be_empty err
+'
+
 test_done
-- 
2.42.0.415.g8942f205c8

[PATCH v4 04/17] gitformat-commit-graph: describe version 2 of BDAT

[Taylor Blau]

From: Jonathan Tan <jonathantanmy@google.com>

The code change to Git to support version 2 will be done in subsequent
commits.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/gitformat-commit-graph.txt | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/Documentation/gitformat-commit-graph.txt b/Documentation/gitformat-commit-graph.txt
index 31cad585e2..3e906e8030 100644
--- a/Documentation/gitformat-commit-graph.txt
+++ b/Documentation/gitformat-commit-graph.txt
@@ -142,13 +142,16 @@ All multi-byte numbers are in network byte order.
 
 ==== Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
     * It starts with header consisting of three unsigned 32-bit integers:
-      - Version of the hash algorithm being used. We currently only support
-	value 1 which corresponds to the 32-bit version of the murmur3 hash
+      - Version of the hash algorithm being used. We currently support
+	value 2 which corresponds to the 32-bit version of the murmur3 hash
 	implemented exactly as described in
 	https://en.wikipedia.org/wiki/MurmurHash#Algorithm and the double
 	hashing technique using seed values 0x293ae76f and 0x7e646e2 as
 	described in https://doi.org/10.1007/978-3-540-30494-4_26 "Bloom Filters
-	in Probabilistic Verification"
+	in Probabilistic Verification". Version 1 Bloom filters have a bug that appears
+	when char is signed and the repository has path names that have characters >=
+	0x80; Git supports reading and writing them, but this ability will be removed
+	in a future version of Git.
       - The number of times a path is hashed and hence the number of bit positions
 	      that cumulatively determine whether a file is present in the commit.
       - The minimum number of bits 'b' per entry in the Bloom filter. If the filter
-- 
2.42.0.415.g8942f205c8

[PATCH v4 05/17] t/helper/test-read-graph.c: extract `dump_graph_info()`

[Taylor Blau]

Prepare for the 'read-graph' test helper to perform other tasks besides
dumping high-level information about the commit-graph by extracting its
main routine into a separate function.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/helper/test-read-graph.c | 31 ++++++++++++++++++-------------
 1 file changed, 18 insertions(+), 13 deletions(-)

diff --git a/t/helper/test-read-graph.c b/t/helper/test-read-graph.c
index 8c7a83f578..3375392f6c 100644
--- a/t/helper/test-read-graph.c
+++ b/t/helper/test-read-graph.c
@@ -5,20 +5,8 @@
 #include "bloom.h"
 #include "setup.h"
 
-int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+static void dump_graph_info(struct commit_graph *graph)
 {
-	struct commit_graph *graph = NULL;
-	struct object_directory *odb;
-
-	setup_git_directory();
-	odb = the_repository->objects->odb;
-
-	prepare_repo_settings(the_repository);
-
-	graph = read_commit_graph_one(the_repository, odb);
-	if (!graph)
-		return 1;
-
 	printf("header: %08x %d %d %d %d\n",
 		ntohl(*(uint32_t*)graph->data),
 		*(unsigned char*)(graph->data + 4),
@@ -57,6 +45,23 @@ int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
 	if (graph->topo_levels)
 		printf(" topo_levels");
 	printf("\n");
+}
+
+int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+{
+	struct commit_graph *graph = NULL;
+	struct object_directory *odb;
+
+	setup_git_directory();
+	odb = the_repository->objects->odb;
+
+	prepare_repo_settings(the_repository);
+
+	graph = read_commit_graph_one(the_repository, odb);
+	if (!graph)
+		return 1;
+
+	dump_graph_info(graph);
 
 	UNLEAK(graph);
 
-- 
2.42.0.415.g8942f205c8

[PATCH v4 06/17] bloom.h: make `load_bloom_filter_from_graph()` public

[Taylor Blau]

Prepare for a future commit to use the load_bloom_filter_from_graph()
function directly to load specific Bloom filters out of the commit-graph
for manual inspection (to be used during tests).

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 6 +++---
 bloom.h | 5 +++++
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index aef6b5fea2..3e78cfe79d 100644
--- a/bloom.c
+++ b/bloom.c
@@ -29,9 +29,9 @@ static inline unsigned char get_bitmask(uint32_t pos)
 	return ((unsigned char)1) << (pos & (BITS_PER_WORD - 1));
 }
 
-static int load_bloom_filter_from_graph(struct commit_graph *g,
-					struct bloom_filter *filter,
-					uint32_t graph_pos)
+int load_bloom_filter_from_graph(struct commit_graph *g,
+				 struct bloom_filter *filter,
+				 uint32_t graph_pos)
 {
 	uint32_t lex_pos, start_index, end_index;
 
diff --git a/bloom.h b/bloom.h
index adde6dfe21..1e4f612d2c 100644
--- a/bloom.h
+++ b/bloom.h
@@ -3,6 +3,7 @@
 
 struct commit;
 struct repository;
+struct commit_graph;
 
 struct bloom_filter_settings {
 	/*
@@ -68,6 +69,10 @@ struct bloom_key {
 	uint32_t *hashes;
 };
 
+int load_bloom_filter_from_graph(struct commit_graph *g,
+				 struct bloom_filter *filter,
+				 uint32_t graph_pos);
+
 /*
  * Calculate the murmur3 32-bit hash value for the given data
  * using the given seed.
-- 
2.42.0.415.g8942f205c8

[PATCH v4 07/17] t/helper/test-read-graph: implement `bloom-filters` mode

[Taylor Blau]

Implement a mode of the "read-graph" test helper to dump out the
hexadecimal contents of the Bloom filter(s) contained in a commit-graph.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/helper/test-read-graph.c | 44 +++++++++++++++++++++++++++++++++-----
 1 file changed, 39 insertions(+), 5 deletions(-)

diff --git a/t/helper/test-read-graph.c b/t/helper/test-read-graph.c
index 3375392f6c..da9ac8584d 100644
--- a/t/helper/test-read-graph.c
+++ b/t/helper/test-read-graph.c
@@ -47,10 +47,32 @@ static void dump_graph_info(struct commit_graph *graph)
 	printf("\n");
 }
 
-int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+static void dump_graph_bloom_filters(struct commit_graph *graph)
+{
+	uint32_t i;
+
+	for (i = 0; i < graph->num_commits + graph->num_commits_in_base; i++) {
+		struct bloom_filter filter = { 0 };
+		size_t j;
+
+		if (load_bloom_filter_from_graph(graph, &filter, i) < 0) {
+			fprintf(stderr, "missing Bloom filter for graph "
+				"position %"PRIu32"\n", i);
+			continue;
+		}
+
+		for (j = 0; j < filter.len; j++)
+			printf("%02x", filter.data[j]);
+		if (filter.len)
+			printf("\n");
+	}
+}
+
+int cmd__read_graph(int argc, const char **argv)
 {
 	struct commit_graph *graph = NULL;
 	struct object_directory *odb;
+	int ret = 0;
 
 	setup_git_directory();
 	odb = the_repository->objects->odb;
@@ -58,12 +80,24 @@ int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
 	prepare_repo_settings(the_repository);
 
 	graph = read_commit_graph_one(the_repository, odb);
-	if (!graph)
-		return 1;
+	if (!graph) {
+		ret = 1;
+		goto done;
+	}
 
-	dump_graph_info(graph);
+	if (argc <= 1)
+		dump_graph_info(graph);
+	else if (!strcmp(argv[1], "bloom-filters"))
+		dump_graph_bloom_filters(graph);
+	else {
+		fprintf(stderr, "unknown sub-command: '%s'\n", argv[1]);
+		ret = 1;
+	}
 
+done:
 	UNLEAK(graph);
 
-	return 0;
+	return ret;
 }
+
+
-- 
2.42.0.415.g8942f205c8

[PATCH v4 08/17] t4216: test changed path filters with high bit paths

[Taylor Blau]

From: Jonathan Tan <jonathantanmy@google.com>

Subsequent commits will teach Git another version of changed path
filter that has different behavior with paths that contain at least
one character with its high bit set, so test the existing behavior as
a baseline.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/t4216-log-bloom.sh | 51 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 51 insertions(+)

diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 2ea5e90955..400dce2193 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -484,4 +484,55 @@ test_expect_success 'merge graph layers with incompatible Bloom settings' '
 	test_must_be_empty err
 '
 
+get_first_changed_path_filter () {
+	test-tool read-graph bloom-filters >filters.dat &&
+	head -n 1 filters.dat
+}
+
+# chosen to be the same under all Unicode normalization forms
+CENT=$(printf "\302\242")
+
+test_expect_success 'set up repo with high bit path, version 1 changed-path' '
+	git init highbit1 &&
+	test_commit -C highbit1 c1 "$CENT" &&
+	git -C highbit1 commit-graph write --reachable --changed-paths
+'
+
+test_expect_success 'setup check value of version 1 changed-path' '
+	(
+		cd highbit1 &&
+		echo "52a9" >expect &&
+		get_first_changed_path_filter >actual
+	)
+'
+
+# expect will not match actual if char is unsigned by default. Write the test
+# in this way, so that a user running this test script can still see if the two
+# files match. (It will appear as an ordinary success if they match, and a skip
+# if not.)
+if test_cmp highbit1/expect highbit1/actual
+then
+	test_set_prereq SIGNED_CHAR_BY_DEFAULT
+fi
+test_expect_success SIGNED_CHAR_BY_DEFAULT 'check value of version 1 changed-path' '
+	# Only the prereq matters for this test.
+	true
+'
+
+test_expect_success 'setup make another commit' '
+	# "git log" does not use Bloom filters for root commits - see how, in
+	# revision.c, rev_compare_tree() (the only code path that eventually calls
+	# get_bloom_filter()) is only called by try_to_simplify_commit() when the commit
+	# has one parent. Therefore, make another commit so that we perform the tests on
+	# a non-root commit.
+	test_commit -C highbit1 anotherc1 "another$CENT"
+'
+
+test_expect_success 'version 1 changed-path used when version 1 requested' '
+	(
+		cd highbit1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
 test_done
-- 
2.42.0.415.g8942f205c8

[PATCH v4 09/17] repo-settings: introduce commitgraph.changedPathsVersion

[Taylor Blau]

From: Jonathan Tan <jonathantanmy@google.com>

A subsequent commit will introduce another version of the changed-path
filter in the commit graph file. In order to control which version to
write (and read), a config variable is needed.

Therefore, introduce this config variable. For forwards compatibility,
teach Git to not read commit graphs when the config variable
is set to an unsupported version. Because we teach Git this,
commitgraph.readChangedPaths is now redundant, so deprecate it and
define its behavior in terms of the config variable we introduce.

This commit does not change the behavior of writing (Git writes changed
path filters when explicitly instructed regardless of any config
variable), but a subsequent commit will restrict Git such that it will
only write when commitgraph.changedPathsVersion is a recognized value.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/config/commitgraph.txt | 23 ++++++++++++++++++++---
 commit-graph.c                       |  2 +-
 oss-fuzz/fuzz-commit-graph.c         |  2 +-
 repo-settings.c                      |  6 +++++-
 repository.h                         |  2 +-
 5 files changed, 28 insertions(+), 7 deletions(-)

diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt
index 30604e4a4c..2dc9170622 100644
--- a/Documentation/config/commitgraph.txt
+++ b/Documentation/config/commitgraph.txt
@@ -9,6 +9,23 @@ commitGraph.maxNewFilters::
 	commit-graph write` (c.f., linkgit:git-commit-graph[1]).
 
 commitGraph.readChangedPaths::
-	If true, then git will use the changed-path Bloom filters in the
-	commit-graph file (if it exists, and they are present). Defaults to
-	true. See linkgit:git-commit-graph[1] for more information.
+	Deprecated. Equivalent to commitGraph.changedPathsVersion=-1 if true, and
+	commitGraph.changedPathsVersion=0 if false. (If commitGraph.changedPathVersion
+	is also set, commitGraph.changedPathsVersion takes precedence.)
+
+commitGraph.changedPathsVersion::
+	Specifies the version of the changed-path Bloom filters that Git will read and
+	write. May be -1, 0 or 1.
++
+Defaults to -1.
++
+If -1, Git will use the version of the changed-path Bloom filters in the
+repository, defaulting to 1 if there are none.
++
+If 0, Git will not read any Bloom filters, and will write version 1 Bloom
+filters when instructed to write.
++
+If 1, Git will only read version 1 Bloom filters, and will write version 1
+Bloom filters.
++
+See linkgit:git-commit-graph[1] for more information.
diff --git a/commit-graph.c b/commit-graph.c
index 0ac79aff5a..bcc9a15cfa 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -411,7 +411,7 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 			graph->read_generation_data = 1;
 	}
 
-	if (s->commit_graph_read_changed_paths) {
+	if (s->commit_graph_changed_paths_version) {
 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   &graph->chunk_bloom_indexes);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
diff --git a/oss-fuzz/fuzz-commit-graph.c b/oss-fuzz/fuzz-commit-graph.c
index 2992079dd9..325c0b991a 100644
--- a/oss-fuzz/fuzz-commit-graph.c
+++ b/oss-fuzz/fuzz-commit-graph.c
@@ -19,7 +19,7 @@ int LLVMFuzzerTestOneInput(const uint8_t *data, size_t size)
 	 * possible.
 	 */
 	the_repository->settings.commit_graph_generation_version = 2;
-	the_repository->settings.commit_graph_read_changed_paths = 1;
+	the_repository->settings.commit_graph_changed_paths_version = 1;
 	g = parse_commit_graph(&the_repository->settings, (void *)data, size);
 	repo_clear(the_repository);
 	free_commit_graph(g);
diff --git a/repo-settings.c b/repo-settings.c
index 525f69c0c7..db8fe817f3 100644
--- a/repo-settings.c
+++ b/repo-settings.c
@@ -24,6 +24,7 @@ void prepare_repo_settings(struct repository *r)
 	int value;
 	const char *strval;
 	int manyfiles;
+	int read_changed_paths;
 
 	if (!r->gitdir)
 		BUG("Cannot add settings for uninitialized repository");
@@ -54,7 +55,10 @@ void prepare_repo_settings(struct repository *r)
 	/* Commit graph config or default, does not cascade (simple) */
 	repo_cfg_bool(r, "core.commitgraph", &r->settings.core_commit_graph, 1);
 	repo_cfg_int(r, "commitgraph.generationversion", &r->settings.commit_graph_generation_version, 2);
-	repo_cfg_bool(r, "commitgraph.readchangedpaths", &r->settings.commit_graph_read_changed_paths, 1);
+	repo_cfg_bool(r, "commitgraph.readchangedpaths", &read_changed_paths, 1);
+	repo_cfg_int(r, "commitgraph.changedpathsversion",
+		     &r->settings.commit_graph_changed_paths_version,
+		     read_changed_paths ? -1 : 0);
 	repo_cfg_bool(r, "gc.writecommitgraph", &r->settings.gc_write_commit_graph, 1);
 	repo_cfg_bool(r, "fetch.writecommitgraph", &r->settings.fetch_write_commit_graph, 0);
 
diff --git a/repository.h b/repository.h
index 5f18486f64..f71154e12c 100644
--- a/repository.h
+++ b/repository.h
@@ -29,7 +29,7 @@ struct repo_settings {
 
 	int core_commit_graph;
 	int commit_graph_generation_version;
-	int commit_graph_read_changed_paths;
+	int commit_graph_changed_paths_version;
 	int gc_write_commit_graph;
 	int fetch_write_commit_graph;
 	int command_requires_full_index;
-- 
2.42.0.415.g8942f205c8

[PATCH v4 10/17] commit-graph: new filter ver. that fixes murmur3

[Taylor Blau]

From: Jonathan Tan <jonathantanmy@google.com>

The murmur3 implementation in bloom.c has a bug when converting series
of 4 bytes into network-order integers when char is signed (which is
controllable by a compiler option, and the default signedness of char is
platform-specific). When a string contains characters with the high bit
set, this bug causes results that, although internally consistent within
Git, does not accord with other implementations of murmur3 (thus,
the changed path filters wouldn't be readable by other off-the-shelf
implementatios of murmur3) and even with Git binaries that were compiled
with different signedness of char. This bug affects both how Git writes
changed path filters to disk and how Git interprets changed path filters
on disk.

Therefore, introduce a new version (2) of changed path filters that
corrects this problem. The existing version (1) is still supported and
is still the default, but users should migrate away from it as soon
as possible.

Because this bug only manifests with characters that have the high bit
set, it may be possible that some (or all) commits in a given repo would
have the same changed path filter both before and after this fix is
applied. However, in order to determine whether this is the case, the
changed paths would first have to be computed, at which point it is not
much more expensive to just compute a new changed path filter.

So this patch does not include any mechanism to "salvage" changed path
filters from repositories. There is also no "mixed" mode - for each
invocation of Git, reading and writing changed path filters are done
with the same version number; this version number may be explicitly
stated (typically if the user knows which version they need) or
automatically determined from the version of the existing changed path
filters in the repository.

There is a change in write_commit_graph(). graph_read_bloom_data()
makes it possible for chunk_bloom_data to be non-NULL but
bloom_filter_settings to be NULL, which causes a segfault later on. I
produced such a segfault while developing this patch, but couldn't find
a way to reproduce it neither after this complete patch (or before),
but in any case it seemed like a good thing to include that might help
future patch authors.

The value in t0095 was obtained from another murmur3 implementation
using the following Go source code:

  package main

  import "fmt"
  import "github.com/spaolacci/murmur3"

  func main() {
          fmt.Printf("%x\n", murmur3.Sum32([]byte("Hello world!")))
          fmt.Printf("%x\n", murmur3.Sum32([]byte{0x99, 0xaa, 0xbb, 0xcc, 0xdd, 0xee, 0xff}))
  }

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/config/commitgraph.txt |   5 +-
 bloom.c                              |  69 +++++++++++++++-
 bloom.h                              |   8 +-
 commit-graph.c                       |  32 ++++++--
 t/helper/test-bloom.c                |   9 ++-
 t/t0095-bloom.sh                     |   8 ++
 t/t4216-log-bloom.sh                 | 114 +++++++++++++++++++++++++++
 7 files changed, 232 insertions(+), 13 deletions(-)

diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt
index 2dc9170622..acc74a2f27 100644
--- a/Documentation/config/commitgraph.txt
+++ b/Documentation/config/commitgraph.txt
@@ -15,7 +15,7 @@ commitGraph.readChangedPaths::
 
 commitGraph.changedPathsVersion::
 	Specifies the version of the changed-path Bloom filters that Git will read and
-	write. May be -1, 0 or 1.
+	write. May be -1, 0, 1, or 2.
 +
 Defaults to -1.
 +
@@ -28,4 +28,7 @@ filters when instructed to write.
 If 1, Git will only read version 1 Bloom filters, and will write version 1
 Bloom filters.
 +
+If 2, Git will only read version 2 Bloom filters, and will write version 2
+Bloom filters.
++
 See linkgit:git-commit-graph[1] for more information.
diff --git a/bloom.c b/bloom.c
index 3e78cfe79d..ebef5cfd2f 100644
--- a/bloom.c
+++ b/bloom.c
@@ -66,7 +66,64 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
  * Not considered to be cryptographically secure.
  * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
  */
-uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len)
+uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len)
+{
+	const uint32_t c1 = 0xcc9e2d51;
+	const uint32_t c2 = 0x1b873593;
+	const uint32_t r1 = 15;
+	const uint32_t r2 = 13;
+	const uint32_t m = 5;
+	const uint32_t n = 0xe6546b64;
+	int i;
+	uint32_t k1 = 0;
+	const char *tail;
+
+	int len4 = len / sizeof(uint32_t);
+
+	uint32_t k;
+	for (i = 0; i < len4; i++) {
+		uint32_t byte1 = (uint32_t)(unsigned char)data[4*i];
+		uint32_t byte2 = ((uint32_t)(unsigned char)data[4*i + 1]) << 8;
+		uint32_t byte3 = ((uint32_t)(unsigned char)data[4*i + 2]) << 16;
+		uint32_t byte4 = ((uint32_t)(unsigned char)data[4*i + 3]) << 24;
+		k = byte1 | byte2 | byte3 | byte4;
+		k *= c1;
+		k = rotate_left(k, r1);
+		k *= c2;
+
+		seed ^= k;
+		seed = rotate_left(seed, r2) * m + n;
+	}
+
+	tail = (data + len4 * sizeof(uint32_t));
+
+	switch (len & (sizeof(uint32_t) - 1)) {
+	case 3:
+		k1 ^= ((uint32_t)(unsigned char)tail[2]) << 16;
+		/*-fallthrough*/
+	case 2:
+		k1 ^= ((uint32_t)(unsigned char)tail[1]) << 8;
+		/*-fallthrough*/
+	case 1:
+		k1 ^= ((uint32_t)(unsigned char)tail[0]) << 0;
+		k1 *= c1;
+		k1 = rotate_left(k1, r1);
+		k1 *= c2;
+		seed ^= k1;
+		break;
+	}
+
+	seed ^= (uint32_t)len;
+	seed ^= (seed >> 16);
+	seed *= 0x85ebca6b;
+	seed ^= (seed >> 13);
+	seed *= 0xc2b2ae35;
+	seed ^= (seed >> 16);
+
+	return seed;
+}
+
+static uint32_t murmur3_seeded_v1(uint32_t seed, const char *data, size_t len)
 {
 	const uint32_t c1 = 0xcc9e2d51;
 	const uint32_t c2 = 0x1b873593;
@@ -131,8 +188,14 @@ void fill_bloom_key(const char *data,
 	int i;
 	const uint32_t seed0 = 0x293ae76f;
 	const uint32_t seed1 = 0x7e646e2c;
-	const uint32_t hash0 = murmur3_seeded(seed0, data, len);
-	const uint32_t hash1 = murmur3_seeded(seed1, data, len);
+	uint32_t hash0, hash1;
+	if (settings->hash_version == 2) {
+		hash0 = murmur3_seeded_v2(seed0, data, len);
+		hash1 = murmur3_seeded_v2(seed1, data, len);
+	} else {
+		hash0 = murmur3_seeded_v1(seed0, data, len);
+		hash1 = murmur3_seeded_v1(seed1, data, len);
+	}
 
 	key->hashes = (uint32_t *)xcalloc(settings->num_hashes, sizeof(uint32_t));
 	for (i = 0; i < settings->num_hashes; i++)
diff --git a/bloom.h b/bloom.h
index 1e4f612d2c..138d57a86b 100644
--- a/bloom.h
+++ b/bloom.h
@@ -8,9 +8,11 @@ struct commit_graph;
 struct bloom_filter_settings {
 	/*
 	 * The version of the hashing technique being used.
-	 * We currently only support version = 1 which is
+	 * The newest version is 2, which is
 	 * the seeded murmur3 hashing technique implemented
-	 * in bloom.c.
+	 * in bloom.c. Bloom filters of version 1 were created
+	 * with prior versions of Git, which had a bug in the
+	 * implementation of the hash function.
 	 */
 	uint32_t hash_version;
 
@@ -80,7 +82,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
  * Not considered to be cryptographically secure.
  * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
  */
-uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len);
+uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len);
 
 void fill_bloom_key(const char *data,
 		    size_t len,
diff --git a/commit-graph.c b/commit-graph.c
index bcc9a15cfa..6b21b17b20 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -314,17 +314,26 @@ static int graph_read_oid_lookup(const unsigned char *chunk_start,
 	return 0;
 }
 
+struct graph_read_bloom_data_context {
+	struct commit_graph *g;
+	int *commit_graph_changed_paths_version;
+};
+
 static int graph_read_bloom_data(const unsigned char *chunk_start,
 				  size_t chunk_size, void *data)
 {
-	struct commit_graph *g = data;
+	struct graph_read_bloom_data_context *c = data;
+	struct commit_graph *g = c->g;
 	uint32_t hash_version;
-	g->chunk_bloom_data = chunk_start;
 	hash_version = get_be32(chunk_start);
 
-	if (hash_version != 1)
+	if (*c->commit_graph_changed_paths_version == -1) {
+		*c->commit_graph_changed_paths_version = hash_version;
+	} else if (hash_version != *c->commit_graph_changed_paths_version) {
 		return 0;
+	}
 
+	g->chunk_bloom_data = chunk_start;
 	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
 	g->bloom_filter_settings->hash_version = hash_version;
 	g->bloom_filter_settings->num_hashes = get_be32(chunk_start + 4);
@@ -412,10 +421,14 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 	}
 
 	if (s->commit_graph_changed_paths_version) {
+		struct graph_read_bloom_data_context context = {
+			.g = graph,
+			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
+		};
 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   &graph->chunk_bloom_indexes);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
-			   graph_read_bloom_data, graph);
+			   graph_read_bloom_data, &context);
 	}
 
 	if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
@@ -2436,6 +2449,13 @@ int write_commit_graph(struct object_directory *odb,
 	}
 	if (!commit_graph_compatible(r))
 		return 0;
+	if (r->settings.commit_graph_changed_paths_version < -1
+	    || r->settings.commit_graph_changed_paths_version > 2) {
+		warning(_("attempting to write a commit-graph, but "
+			  "'commitgraph.changedPathsVersion' (%d) is not supported"),
+			r->settings.commit_graph_changed_paths_version);
+		return 0;
+	}
 
 	CALLOC_ARRAY(ctx, 1);
 	ctx->r = r;
@@ -2448,6 +2468,8 @@ int write_commit_graph(struct object_directory *odb,
 	ctx->write_generation_data = (get_configured_generation_version(r) == 2);
 	ctx->num_generation_data_overflows = 0;
 
+	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version == 2
+		? 2 : 1;
 	bloom_settings.bits_per_entry = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY",
 						      bloom_settings.bits_per_entry);
 	bloom_settings.num_hashes = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_NUM_HASHES",
@@ -2477,7 +2499,7 @@ int write_commit_graph(struct object_directory *odb,
 		g = ctx->r->objects->commit_graph;
 
 		/* We have changed-paths already. Keep them in the next graph */
-		if (g && g->chunk_bloom_data) {
+		if (g && g->bloom_filter_settings) {
 			ctx->changed_paths = 1;
 			ctx->bloom_settings = g->bloom_filter_settings;
 		}
diff --git a/t/helper/test-bloom.c b/t/helper/test-bloom.c
index aabe31d724..3cbc0a5b50 100644
--- a/t/helper/test-bloom.c
+++ b/t/helper/test-bloom.c
@@ -50,6 +50,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid)
 
 static const char *bloom_usage = "\n"
 "  test-tool bloom get_murmur3 <string>\n"
+"  test-tool bloom get_murmur3_seven_highbit\n"
 "  test-tool bloom generate_filter <string> [<string>...]\n"
 "  test-tool bloom get_filter_for_commit <commit-hex>\n";
 
@@ -64,7 +65,13 @@ int cmd__bloom(int argc, const char **argv)
 		uint32_t hashed;
 		if (argc < 3)
 			usage(bloom_usage);
-		hashed = murmur3_seeded(0, argv[2], strlen(argv[2]));
+		hashed = murmur3_seeded_v2(0, argv[2], strlen(argv[2]));
+		printf("Murmur3 Hash with seed=0:0x%08x\n", hashed);
+	}
+
+	if (!strcmp(argv[1], "get_murmur3_seven_highbit")) {
+		uint32_t hashed;
+		hashed = murmur3_seeded_v2(0, "\x99\xaa\xbb\xcc\xdd\xee\xff", 7);
 		printf("Murmur3 Hash with seed=0:0x%08x\n", hashed);
 	}
 
diff --git a/t/t0095-bloom.sh b/t/t0095-bloom.sh
index b567383eb8..c8d84ab606 100755
--- a/t/t0095-bloom.sh
+++ b/t/t0095-bloom.sh
@@ -29,6 +29,14 @@ test_expect_success 'compute unseeded murmur3 hash for test string 2' '
 	test_cmp expect actual
 '
 
+test_expect_success 'compute unseeded murmur3 hash for test string 3' '
+	cat >expect <<-\EOF &&
+	Murmur3 Hash with seed=0:0xa183ccfd
+	EOF
+	test-tool bloom get_murmur3_seven_highbit >actual &&
+	test_cmp expect actual
+'
+
 test_expect_success 'compute bloom key for empty string' '
 	cat >expect <<-\EOF &&
 	Hashes:0x5615800c|0x5b966560|0x61174ab4|0x66983008|0x6c19155c|0x7199fab0|0x771ae004|
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 400dce2193..68066b7928 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -535,4 +535,118 @@ test_expect_success 'version 1 changed-path used when version 1 requested' '
 	)
 '
 
+test_expect_success 'version 1 changed-path not used when version 2 requested' '
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion 2 &&
+		test_bloom_filters_not_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 1 changed-path used when autodetect requested' '
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'when writing another commit graph, preserve existing version 1 of changed-path' '
+	test_commit -C highbit1 c1double "$CENT$CENT" &&
+	git -C highbit1 commit-graph write --reachable --changed-paths &&
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		echo "options: bloom(1,10,7) read_generation_data" >expect &&
+		test-tool read-graph >full &&
+		grep options full >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'set up repo with high bit path, version 2 changed-path' '
+	git init highbit2 &&
+	git -C highbit2 config --add commitgraph.changedPathsVersion 2 &&
+	test_commit -C highbit2 c2 "$CENT" &&
+	git -C highbit2 commit-graph write --reachable --changed-paths
+'
+
+test_expect_success 'check value of version 2 changed-path' '
+	(
+		cd highbit2 &&
+		echo "c01f" >expect &&
+		get_first_changed_path_filter >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'setup make another commit' '
+	# "git log" does not use Bloom filters for root commits - see how, in
+	# revision.c, rev_compare_tree() (the only code path that eventually calls
+	# get_bloom_filter()) is only called by try_to_simplify_commit() when the commit
+	# has one parent. Therefore, make another commit so that we perform the tests on
+	# a non-root commit.
+	test_commit -C highbit2 anotherc2 "another$CENT"
+'
+
+test_expect_success 'version 2 changed-path used when version 2 requested' '
+	(
+		cd highbit2 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 2 changed-path not used when version 1 requested' '
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion 1 &&
+		test_bloom_filters_not_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 2 changed-path used when autodetect requested' '
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'when writing another commit graph, preserve existing version 2 of changed-path' '
+	test_commit -C highbit2 c2double "$CENT$CENT" &&
+	git -C highbit2 commit-graph write --reachable --changed-paths &&
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		echo "options: bloom(2,10,7) read_generation_data" >expect &&
+		test-tool read-graph >full &&
+		grep options full >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'when writing commit graph, do not reuse changed-path of another version' '
+	git init doublewrite &&
+	test_commit -C doublewrite c "$CENT" &&
+	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
+	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	for v in -2 3
+	do
+		git -C doublewrite config --add commitgraph.changedPathsVersion $v &&
+		git -C doublewrite commit-graph write --reachable --changed-paths 2>err &&
+		cat >expect <<-EOF &&
+		warning: attempting to write a commit-graph, but ${SQ}commitgraph.changedPathsVersion${SQ} ($v) is not supported
+		EOF
+		test_cmp expect err || return 1
+	done &&
+	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
+	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	(
+		cd doublewrite &&
+		echo "c01f" >expect &&
+		get_first_changed_path_filter >actual &&
+		test_cmp expect actual
+	)
+'
+
 test_done
-- 
2.42.0.415.g8942f205c8

[PATCH v4 11/17] bloom: annotate filters with hash version

[Taylor Blau]

In subsequent commits, we will want to load existing Bloom filters out
of a commit-graph, even when the hash version they were computed with
does not match the value of `commitGraph.changedPathVersion`.

In order to differentiate between the two, add a "version" field to each
Bloom filter.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 11 ++++++++---
 bloom.h |  1 +
 2 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index ebef5cfd2f..9b6a30f6f6 100644
--- a/bloom.c
+++ b/bloom.c
@@ -55,6 +55,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
 	filter->data = (unsigned char *)(g->chunk_bloom_data +
 					sizeof(unsigned char) * start_index +
 					BLOOMDATA_CHUNK_HEADER_SIZE);
+	filter->version = g->bloom_filter_settings->hash_version;
 
 	return 1;
 }
@@ -240,11 +241,13 @@ static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 	return strcmp(e1->path, e2->path);
 }
 
-static void init_truncated_large_filter(struct bloom_filter *filter)
+static void init_truncated_large_filter(struct bloom_filter *filter,
+					int version)
 {
 	filter->data = xmalloc(1);
 	filter->data[0] = 0xFF;
 	filter->len = 1;
+	filter->version = version;
 }
 
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
@@ -329,13 +332,15 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 		}
 
 		if (hashmap_get_size(&pathmap) > settings->max_changed_paths) {
-			init_truncated_large_filter(filter);
+			init_truncated_large_filter(filter,
+						    settings->hash_version);
 			if (computed)
 				*computed |= BLOOM_TRUNC_LARGE;
 			goto cleanup;
 		}
 
 		filter->len = (hashmap_get_size(&pathmap) * settings->bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
+		filter->version = settings->hash_version;
 		if (!filter->len) {
 			if (computed)
 				*computed |= BLOOM_TRUNC_EMPTY;
@@ -355,7 +360,7 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 	} else {
 		for (i = 0; i < diff_queued_diff.nr; i++)
 			diff_free_filepair(diff_queued_diff.queue[i]);
-		init_truncated_large_filter(filter);
+		init_truncated_large_filter(filter, settings->hash_version);
 
 		if (computed)
 			*computed |= BLOOM_TRUNC_LARGE;
diff --git a/bloom.h b/bloom.h
index 138d57a86b..330a140520 100644
--- a/bloom.h
+++ b/bloom.h
@@ -55,6 +55,7 @@ struct bloom_filter_settings {
 struct bloom_filter {
 	unsigned char *data;
 	size_t len;
+	int version;
 };
 
 /*
-- 
2.42.0.415.g8942f205c8

[PATCH v4 12/17] bloom: prepare to discard incompatible Bloom filters

[Taylor Blau]

Callers use the inline `get_bloom_filter()` implementation as a thin
wrapper around `get_or_compute_bloom_filter()`. The former calls the
latter with a value of "0" for `compute_if_not_present`, making
`get_bloom_filter()` the default read-only path for fetching an existing
Bloom filter.

Callers expect the value returned from `get_bloom_filter()` is usable,
that is that it's compatible with the configured value corresponding to
`commitGraph.changedPathsVersion`.

This is OK, since the commit-graph machinery only initializes its BDAT
chunk (thereby enabling it to service Bloom filter queries) when the
Bloom filter hash_version is compatible with our settings. So any value
returned by `get_bloom_filter()` is trivially useable.

However, subsequent commits will load the BDAT chunk even when the Bloom
filters are built with incompatible hash versions. Prepare to handle
this by teaching `get_bloom_filter()` to discard filters that are
incompatible with the configured hash version.

Callers who wish to read incompatible filters (e.g., for upgrading
filters from v1 to v2) may use the lower level routine,
`get_or_compute_bloom_filter()`.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 20 +++++++++++++++++++-
 bloom.h | 20 ++++++++++++++++++--
 2 files changed, 37 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index 9b6a30f6f6..739fa093ba 100644
--- a/bloom.c
+++ b/bloom.c
@@ -250,6 +250,23 @@ static void init_truncated_large_filter(struct bloom_filter *filter,
 	filter->version = version;
 }
 
+struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c)
+{
+	struct bloom_filter *filter;
+	int hash_version;
+
+	filter = get_or_compute_bloom_filter(r, c, 0, NULL, NULL);
+	if (!filter)
+		return NULL;
+
+	prepare_repo_settings(r);
+	hash_version = r->settings.commit_graph_changed_paths_version;
+
+	if (!(hash_version == -1 || hash_version == filter->version))
+		return NULL; /* unusable filter */
+	return filter;
+}
+
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						 struct commit *c,
 						 int compute_if_not_present,
@@ -275,7 +292,8 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						     filter, graph_pos);
 	}
 
-	if (filter->data && filter->len)
+	if ((filter->data && filter->len) &&
+	    (!settings || settings->hash_version == filter->version))
 		return filter;
 	if (!compute_if_not_present)
 		return NULL;
diff --git a/bloom.h b/bloom.h
index 330a140520..bfe389e29c 100644
--- a/bloom.h
+++ b/bloom.h
@@ -110,8 +110,24 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						 const struct bloom_filter_settings *settings,
 						 enum bloom_filter_computed *computed);
 
-#define get_bloom_filter(r, c) get_or_compute_bloom_filter( \
-	(r), (c), 0, NULL, NULL)
+/*
+ * Find the Bloom filter associated with the given commit "c".
+ *
+ * If any of the following are true
+ *
+ *   - the repository does not have a commit-graph, or
+ *   - the repository disables reading from the commit-graph, or
+ *   - the given commit does not have a Bloom filter computed, or
+ *   - there is a Bloom filter for commit "c", but it cannot be read
+ *     because the filter uses an incompatible version of murmur3
+ *
+ * , then `get_bloom_filter()` will return NULL. Otherwise, the corresponding
+ * Bloom filter will be returned.
+ *
+ * For callers who wish to inspect Bloom filters with incompatible hash
+ * versions, use get_or_compute_bloom_filter().
+ */
+struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c);
 
 int bloom_filter_contains(const struct bloom_filter *filter,
 			  const struct bloom_key *key,
-- 
2.42.0.415.g8942f205c8

[PATCH v4 13/17] commit-graph.c: unconditionally load Bloom filters

[Taylor Blau]

In 9e4df4da07 (commit-graph: new filter ver. that fixes murmur3,
2023-08-01), we began ignoring the Bloom data ("BDAT") chunk for
commit-graphs whose Bloom filters were computed using a hash version
incompatible with the value of `commitGraph.changedPathVersion`.

Now that the Bloom API has been hardened to discard these incompatible
filters (with the exception of low-level APIs), we can safely load these
Bloom filters unconditionally.

We no longer want to return early from `graph_read_bloom_data()`, and
similarly do not want to set the bloom_settings' `hash_version` field as
a side-effect. The latter is because we want to wait until we know which
Bloom settings we're using (either the defaults, from the GIT_TEST
variables, or from the previous commit-graph layer) before deciding what
hash_version to use.

If we detect an existing BDAT chunk, we'll infer the rest of the
settings (e.g., number of hashes, bits per entry, and maximum number of
changed paths) from the earlier graph layer. The hash_version will be
inferred from the previous layer as well, unless one has already been
specified via configuration.

Once all of that is done, we normalize the value of the hash_version to
either "1" or "2".

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/commit-graph.c b/commit-graph.c
index 6b21b17b20..7d0fb32107 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -327,12 +327,6 @@ static int graph_read_bloom_data(const unsigned char *chunk_start,
 	uint32_t hash_version;
 	hash_version = get_be32(chunk_start);
 
-	if (*c->commit_graph_changed_paths_version == -1) {
-		*c->commit_graph_changed_paths_version = hash_version;
-	} else if (hash_version != *c->commit_graph_changed_paths_version) {
-		return 0;
-	}
-
 	g->chunk_bloom_data = chunk_start;
 	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
 	g->bloom_filter_settings->hash_version = hash_version;
@@ -2468,8 +2462,7 @@ int write_commit_graph(struct object_directory *odb,
 	ctx->write_generation_data = (get_configured_generation_version(r) == 2);
 	ctx->num_generation_data_overflows = 0;
 
-	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version == 2
-		? 2 : 1;
+	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version;
 	bloom_settings.bits_per_entry = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY",
 						      bloom_settings.bits_per_entry);
 	bloom_settings.num_hashes = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_NUM_HASHES",
@@ -2501,10 +2494,18 @@ int write_commit_graph(struct object_directory *odb,
 		/* We have changed-paths already. Keep them in the next graph */
 		if (g && g->bloom_filter_settings) {
 			ctx->changed_paths = 1;
-			ctx->bloom_settings = g->bloom_filter_settings;
+
+			/* don't propagate the hash_version unless unspecified */
+			if (bloom_settings.hash_version == -1)
+				bloom_settings.hash_version = g->bloom_filter_settings->hash_version;
+			bloom_settings.bits_per_entry = g->bloom_filter_settings->bits_per_entry;
+			bloom_settings.num_hashes = g->bloom_filter_settings->num_hashes;
+			bloom_settings.max_changed_paths = g->bloom_filter_settings->max_changed_paths;
 		}
 	}
 
+	bloom_settings.hash_version = bloom_settings.hash_version == 2 ? 2 : 1;
+
 	if (ctx->split) {
 		struct commit_graph *g = ctx->r->objects->commit_graph;
 
-- 
2.42.0.415.g8942f205c8

[PATCH v4 14/17] commit-graph: drop unnecessary `graph_read_bloom_data_context`

[Taylor Blau]

The `graph_read_bloom_data_context` struct was introduced in an earlier
commit in order to pass pointers to the commit-graph and changed-path
Bloom filter version when reading the BDAT chunk.

The previous commit no longer writes through the changed_paths_version
pointer, making the surrounding context structure unnecessary. Drop it
and pass a pointer to the commit-graph directly when reading the BDAT
chunk.

Noticed-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c | 14 ++------------
 1 file changed, 2 insertions(+), 12 deletions(-)

diff --git a/commit-graph.c b/commit-graph.c
index 7d0fb32107..b70d57b085 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -314,16 +314,10 @@ static int graph_read_oid_lookup(const unsigned char *chunk_start,
 	return 0;
 }
 
-struct graph_read_bloom_data_context {
-	struct commit_graph *g;
-	int *commit_graph_changed_paths_version;
-};
-
 static int graph_read_bloom_data(const unsigned char *chunk_start,
 				  size_t chunk_size, void *data)
 {
-	struct graph_read_bloom_data_context *c = data;
-	struct commit_graph *g = c->g;
+	struct commit_graph *g = data;
 	uint32_t hash_version;
 	hash_version = get_be32(chunk_start);
 
@@ -415,14 +409,10 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 	}
 
 	if (s->commit_graph_changed_paths_version) {
-		struct graph_read_bloom_data_context context = {
-			.g = graph,
-			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
-		};
 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   &graph->chunk_bloom_indexes);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
-			   graph_read_bloom_data, &context);
+			   graph_read_bloom_data, graph);
 	}
 
 	if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
-- 
2.42.0.415.g8942f205c8

[PATCH v4 15/17] object.h: fix mis-aligned flag bits table

[Taylor Blau]

Bit position 23 is one column too far to the left.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 object.h | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/object.h b/object.h
index 114d45954d..db25714b4e 100644
--- a/object.h
+++ b/object.h
@@ -62,7 +62,7 @@ void object_array_init(struct object_array *array);
 
 /*
  * object flag allocation:
- * revision.h:               0---------10         15             23------27
+ * revision.h:               0---------10         15               23------27
  * fetch-pack.c:             01    67
  * negotiator/default.c:       2--5
  * walker.c:                 0-2
-- 
2.42.0.415.g8942f205c8

[PATCH v4 16/17] commit-graph: reuse existing Bloom filters where possible

[Taylor Blau]

In 9e4df4da07 (commit-graph: new filter ver. that fixes murmur3,
2023-08-01), a bug was described where it's possible for Git to produce
non-murmur3 hashes when the platform's "char" type is signed, and there
are paths with characters whose highest bit is set (i.e. all characters
>= 0x80).

That patch allows the caller to control which version of Bloom filters
are read and written. However, even on platforms with a signed "char"
type, it is possible to reuse existing Bloom filters if and only if
there are no changed paths in any commit's first parent tree-diff whose
characters have their highest bit set.

When this is the case, we can reuse the existing filter without having
to compute a new one. This is done by marking trees which are known to
have (or not have) any such paths. When a commit's root tree is verified
to not have any such paths, we mark it as such and declare that the
commit's Bloom filter is reusable.

Note that this heuristic only goes in one direction. If neither a commit
nor its first parent have any paths in their trees with non-ASCII
characters, then we know for certain that a path with non-ASCII
characters will not appear in a tree-diff against that commit's first
parent. The reverse isn't necessarily true: just because the tree-diff
doesn't contain any such paths does not imply that no such paths exist
in either tree.

So we end up recomputing some Bloom filters that we don't strictly have
to (i.e. their bits are the same no matter which version of murmur3 we
use). But culling these out is impossible, since we'd have to perform
the full tree-diff, which is the same effort as computing the Bloom
filter from scratch.

But because we can cache our results in each tree's flag bits, we can
often avoid recomputing many filters, thereby reducing the time it takes
to run

    $ git commit-graph write --changed-paths --reachable

when upgrading from v1 to v2 Bloom filters.

To benchmark this, let's generate a commit-graph in linux.git with v1
changed-paths in generation order[^1]:

    $ git clone git@github.com:torvalds/linux.git
    $ cd linux
    $ git commit-graph write --reachable --changed-paths
    $ graph=".git/objects/info/commit-graph"
    $ mv $graph{,.bak}

Then let's time how long it takes to go from v1 to v2 filters (with and
without the upgrade path enabled), resetting the state of the
commit-graph each time:

    $ git config commitGraph.changedPathsVersion 2
    $ hyperfine -p 'cp -f $graph.bak $graph' -L v 0,1 \
        'GIT_TEST_UPGRADE_BLOOM_FILTERS={v} git.compile commit-graph write --reachable --changed-paths'

On linux.git (where there aren't any non-ASCII paths), the timings
indicate that this patch represents a speed-up over recomputing all
Bloom filters from scratch:

    Benchmark 1: GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths
      Time (mean ± σ):     124.873 s ±  0.316 s    [User: 124.081 s, System: 0.643 s]
      Range (min … max):   124.621 s … 125.227 s    3 runs

    Benchmark 2: GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths
      Time (mean ± σ):     79.271 s ±  0.163 s    [User: 74.611 s, System: 4.521 s]
      Range (min … max):   79.112 s … 79.437 s    3 runs

    Summary
      'GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths' ran
        1.58 ± 0.01 times faster than 'GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths'

On git.git, we do have some non-ASCII paths, giving us a more modest
improvement from 4.163 seconds to 3.348 seconds, for a 1.24x speed-up.
On my machine, the stats for git.git are:

  - 8,285 Bloom filters computed from scratch
  - 10 Bloom filters generated as empty
  - 4 Bloom filters generated as truncated due to too many changed paths
  - 65,114 Bloom filters were reused when transitioning from v1 to v2.

[^1]: Note that this is is important, since `--stdin-packs` or
  `--stdin-commits` orders commits in the commit-graph by their pack
  position (with `--stdin-packs`) or in the raw input (with
  `--stdin-commits`).

  Since we compute Bloom filters in the same order that commits appear
  in the graph, we must see a commit's (first) parent before we process
  the commit itself. This is only guaranteed to happen when sorting
  commits by their generation number.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c              | 90 ++++++++++++++++++++++++++++++++++++++++++--
 bloom.h              |  1 +
 commit-graph.c       |  5 +++
 object.h             |  1 +
 t/t4216-log-bloom.sh | 35 ++++++++++++++++-
 5 files changed, 128 insertions(+), 4 deletions(-)

diff --git a/bloom.c b/bloom.c
index 739fa093ba..24dd874e46 100644
--- a/bloom.c
+++ b/bloom.c
@@ -7,6 +7,9 @@
 #include "commit-graph.h"
 #include "commit.h"
 #include "commit-slab.h"
+#include "tree.h"
+#include "tree-walk.h"
+#include "config.h"
 
 define_commit_slab(bloom_filter_slab, struct bloom_filter);
 
@@ -250,6 +253,73 @@ static void init_truncated_large_filter(struct bloom_filter *filter,
 	filter->version = version;
 }
 
+#define VISITED   (1u<<21)
+#define HIGH_BITS (1u<<22)
+
+static int has_entries_with_high_bit(struct repository *r, struct tree *t)
+{
+	if (parse_tree(t))
+		return 1;
+
+	if (!(t->object.flags & VISITED)) {
+		struct tree_desc desc;
+		struct name_entry entry;
+
+		init_tree_desc(&desc, t->buffer, t->size);
+		while (tree_entry(&desc, &entry)) {
+			size_t i;
+			for (i = 0; i < entry.pathlen; i++) {
+				if (entry.path[i] & 0x80) {
+					t->object.flags |= HIGH_BITS;
+					goto done;
+				}
+			}
+
+			if (S_ISDIR(entry.mode)) {
+				struct tree *sub = lookup_tree(r, &entry.oid);
+				if (sub && has_entries_with_high_bit(r, sub)) {
+					t->object.flags |= HIGH_BITS;
+					goto done;
+				}
+			}
+
+		}
+
+done:
+		t->object.flags |= VISITED;
+	}
+
+	return !!(t->object.flags & HIGH_BITS);
+}
+
+static int commit_tree_has_high_bit_paths(struct repository *r,
+					  struct commit *c)
+{
+	struct tree *t;
+	if (repo_parse_commit(r, c))
+		return 1;
+	t = repo_get_commit_tree(r, c);
+	if (!t)
+		return 1;
+	return has_entries_with_high_bit(r, t);
+}
+
+static struct bloom_filter *upgrade_filter(struct repository *r, struct commit *c,
+					   struct bloom_filter *filter,
+					   int hash_version)
+{
+	struct commit_list *p = c->parents;
+	if (commit_tree_has_high_bit_paths(r, c))
+		return NULL;
+
+	if (p && commit_tree_has_high_bit_paths(r, p->item))
+		return NULL;
+
+	filter->version = hash_version;
+
+	return filter;
+}
+
 struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c)
 {
 	struct bloom_filter *filter;
@@ -292,9 +362,23 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						     filter, graph_pos);
 	}
 
-	if ((filter->data && filter->len) &&
-	    (!settings || settings->hash_version == filter->version))
-		return filter;
+	if (filter->data && filter->len) {
+		struct bloom_filter *upgrade;
+		if (!settings || settings->hash_version == filter->version)
+			return filter;
+
+		/* version mismatch, see if we can upgrade */
+		if (compute_if_not_present &&
+		    git_env_bool("GIT_TEST_UPGRADE_BLOOM_FILTERS", 1)) {
+			upgrade = upgrade_filter(r, c, filter,
+						 settings->hash_version);
+			if (upgrade) {
+				if (computed)
+					*computed |= BLOOM_UPGRADED;
+				return upgrade;
+			}
+		}
+	}
 	if (!compute_if_not_present)
 		return NULL;
 
diff --git a/bloom.h b/bloom.h
index bfe389e29c..e3a9b68905 100644
--- a/bloom.h
+++ b/bloom.h
@@ -102,6 +102,7 @@ enum bloom_filter_computed {
 	BLOOM_COMPUTED     = (1 << 1),
 	BLOOM_TRUNC_LARGE  = (1 << 2),
 	BLOOM_TRUNC_EMPTY  = (1 << 3),
+	BLOOM_UPGRADED     = (1 << 4),
 };
 
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
diff --git a/commit-graph.c b/commit-graph.c
index b70d57b085..50dcbb4d9b 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -1102,6 +1102,7 @@ struct write_commit_graph_context {
 	int count_bloom_filter_not_computed;
 	int count_bloom_filter_trunc_empty;
 	int count_bloom_filter_trunc_large;
+	int count_bloom_filter_upgraded;
 };
 
 static int write_graph_chunk_fanout(struct hashfile *f,
@@ -1709,6 +1710,8 @@ static void trace2_bloom_filter_write_statistics(struct write_commit_graph_conte
 			   ctx->count_bloom_filter_trunc_empty);
 	trace2_data_intmax("commit-graph", ctx->r, "filter-trunc-large",
 			   ctx->count_bloom_filter_trunc_large);
+	trace2_data_intmax("commit-graph", ctx->r, "filter-upgraded",
+			   ctx->count_bloom_filter_upgraded);
 }
 
 static void compute_bloom_filters(struct write_commit_graph_context *ctx)
@@ -1750,6 +1753,8 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)
 				ctx->count_bloom_filter_trunc_empty++;
 			if (computed & BLOOM_TRUNC_LARGE)
 				ctx->count_bloom_filter_trunc_large++;
+		} else if (computed & BLOOM_UPGRADED) {
+			ctx->count_bloom_filter_upgraded++;
 		} else if (computed & BLOOM_NOT_COMPUTED)
 			ctx->count_bloom_filter_not_computed++;
 		ctx->total_bloom_filter_data_size += filter
diff --git a/object.h b/object.h
index db25714b4e..2e5e08725f 100644
--- a/object.h
+++ b/object.h
@@ -75,6 +75,7 @@ void object_array_init(struct object_array *array);
  * commit-reach.c:                                  16-----19
  * sha1-name.c:                                              20
  * list-objects-filter.c:                                      21
+ * bloom.c:                                                    2122
  * builtin/fsck.c:           0--3
  * builtin/gc.c:             0
  * builtin/index-pack.c:                                     2021
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 68066b7928..569f2b6f8b 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -221,6 +221,10 @@ test_filter_trunc_large () {
 	grep "\"key\":\"filter-trunc-large\",\"value\":\"$1\"" $2
 }
 
+test_filter_upgraded () {
+	grep "\"key\":\"filter-upgraded\",\"value\":\"$1\"" $2
+}
+
 test_expect_success 'correctly report changes over limit' '
 	git init limits &&
 	(
@@ -628,7 +632,13 @@ test_expect_success 'when writing another commit graph, preserve existing versio
 test_expect_success 'when writing commit graph, do not reuse changed-path of another version' '
 	git init doublewrite &&
 	test_commit -C doublewrite c "$CENT" &&
+
 	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C doublewrite commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
 	git -C doublewrite commit-graph write --reachable --changed-paths &&
 	for v in -2 3
 	do
@@ -639,8 +649,13 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano
 		EOF
 		test_cmp expect err || return 1
 	done &&
+
 	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
-	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C doublewrite commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
 	(
 		cd doublewrite &&
 		echo "c01f" >expect &&
@@ -649,4 +664,22 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano
 	)
 '
 
+test_expect_success 'when writing commit graph, reuse changed-path of another version where possible' '
+	git init upgrade &&
+
+	test_commit -C upgrade base no-high-bits &&
+
+	git -C upgrade config --add commitgraph.changedPathsVersion 1 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C upgrade commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
+	git -C upgrade config --add commitgraph.changedPathsVersion 2 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C upgrade commit-graph write --reachable --changed-paths &&
+	test_filter_computed 0 trace2.txt &&
+	test_filter_upgraded 1 trace2.txt
+'
+
 test_done
-- 
2.42.0.415.g8942f205c8

[PATCH v4 17/17] bloom: introduce `deinit_bloom_filters()`

[Taylor Blau]

After we are done using Bloom filters, we do not currently clean up any
memory allocated by the commit slab used to store those filters in the
first place.

Besides the bloom_filter structures themselves, there is mostly nothing
to free() in the first place, since in the read-only path all Bloom
filter's `data` members point to a memory mapped region in the
commit-graph file itself.

But when generating Bloom filters from scratch (or initializing
truncated filters) we allocate additional memory to store the filter's
data.

Keep track of when we need to free() this additional chunk of memory by
using an extra pointer `to_free`. Most of the time this will be NULL
(indicating that we are representing an existing Bloom filter stored in
a memory mapped region). When it is non-NULL, free it before discarding
the Bloom filters slab.

Suggested-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c        | 16 +++++++++++++++-
 bloom.h        |  3 +++
 commit-graph.c |  4 ++++
 3 files changed, 22 insertions(+), 1 deletion(-)

diff --git a/bloom.c b/bloom.c
index 24dd874e46..ff131893cd 100644
--- a/bloom.c
+++ b/bloom.c
@@ -59,6 +59,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
 					sizeof(unsigned char) * start_index +
 					BLOOMDATA_CHUNK_HEADER_SIZE);
 	filter->version = g->bloom_filter_settings->hash_version;
+	filter->to_free = NULL;
 
 	return 1;
 }
@@ -231,6 +232,18 @@ void init_bloom_filters(void)
 	init_bloom_filter_slab(&bloom_filters);
 }
 
+static void free_one_bloom_filter(struct bloom_filter *filter)
+{
+	if (!filter)
+		return;
+	free(filter->to_free);
+}
+
+void deinit_bloom_filters(void)
+{
+	deep_clear_bloom_filter_slab(&bloom_filters, free_one_bloom_filter);
+}
+
 static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 		       const struct hashmap_entry *eptr,
 		       const struct hashmap_entry *entry_or_key,
@@ -247,7 +260,7 @@ static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 static void init_truncated_large_filter(struct bloom_filter *filter,
 					int version)
 {
-	filter->data = xmalloc(1);
+	filter->data = filter->to_free = xmalloc(1);
 	filter->data[0] = 0xFF;
 	filter->len = 1;
 	filter->version = version;
@@ -449,6 +462,7 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 			filter->len = 1;
 		}
 		CALLOC_ARRAY(filter->data, filter->len);
+		filter->to_free = filter->data;
 
 		hashmap_for_each_entry(&pathmap, &iter, e, entry) {
 			struct bloom_key key;
diff --git a/bloom.h b/bloom.h
index e3a9b68905..d20e64bfbb 100644
--- a/bloom.h
+++ b/bloom.h
@@ -56,6 +56,8 @@ struct bloom_filter {
 	unsigned char *data;
 	size_t len;
 	int version;
+
+	void *to_free;
 };
 
 /*
@@ -96,6 +98,7 @@ void add_key_to_filter(const struct bloom_key *key,
 		       const struct bloom_filter_settings *settings);
 
 void init_bloom_filters(void);
+void deinit_bloom_filters(void);
 
 enum bloom_filter_computed {
 	BLOOM_NOT_COMPUTED = (1 << 0),
diff --git a/commit-graph.c b/commit-graph.c
index 50dcbb4d9b..60fa64d956 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -779,6 +779,7 @@ struct bloom_filter_settings *get_bloom_filter_settings(struct repository *r)
 void close_commit_graph(struct raw_object_store *o)
 {
 	clear_commit_graph_data_slab(&commit_graph_data_slab);
+	deinit_bloom_filters();
 	free_commit_graph(o->commit_graph);
 	o->commit_graph = NULL;
 }
@@ -2583,6 +2584,9 @@ int write_commit_graph(struct object_directory *odb,
 
 	res = write_commit_graph_file(ctx);
 
+	if (ctx->changed_paths)
+		deinit_bloom_filters();
+
 	if (ctx->split)
 		mark_commit_graphs(ctx);
 
-- 
2.42.0.415.g8942f205c8

Re: [PATCH v3 05/10] bulk-checkin: extract abstract `bulk_checkin_source`

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

> A future commit will want to implement a very similar routine as in
> `stream_blob_to_pack()` with two notable changes:
>
>   - Instead of streaming just OBJ_BLOBs, this new function may want to
>     stream objects of arbitrary type.
>
>   - Instead of streaming the object's contents from an open
>     file-descriptor, this new function may want to "stream" its contents
>     from memory.
>
> To avoid duplicating a significant chunk of code between the existing
> `stream_blob_to_pack()`, extract an abstract `bulk_checkin_source`. This
> concept currently is a thin layer of `lseek()` and `read_in_full()`, but
> will grow to understand how to perform analogous operations when writing
> out an object's contents from memory.
>
> Suggested-by: Junio C Hamano <gitster@pobox.com>
> Signed-off-by: Taylor Blau <me@ttaylorr.com>
> ---
>  bulk-checkin.c | 61 +++++++++++++++++++++++++++++++++++++++++++-------
>  1 file changed, 53 insertions(+), 8 deletions(-)

> diff --git a/bulk-checkin.c b/bulk-checkin.c
> index f4914fb6d1..fc1d902018 100644
> --- a/bulk-checkin.c
> +++ b/bulk-checkin.c
> @@ -140,8 +140,41 @@ static int already_written(struct bulk_checkin_packfile *state, struct object_id
>  	return 0;
>  }
>  
> +struct bulk_checkin_source {
> +	enum { SOURCE_FILE } type;
> +
> +	/* SOURCE_FILE fields */
> +	int fd;
> +
> +	/* common fields */
> +	size_t size;
> +	const char *path;
> +};

Looks OK, even though I expected to see a bit more involved object
orientation with something like

	struct bulk_checkin_source {
		off_t (*read)(struct bulk_checkin_source *, void *, size_t);
		off_t (*seek)(struct bulk_checkin_source *, off_t);
		union {
			struct {
				int fd;
				size_t size;
				const char *path;
			} from_fd;
			struct {
				...
			} incore;
		} data;
	};

As there will only be two subclasses of this thing, it may not
matter all that much right now, but it would be much nicer as your
methods do not have to care about "switch (enum) { case FILE: ... }".

Re: [PATCH v3 08/10] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

> Now that we have factored out many of the common routines necessary to
> index a new object into a pack created by the bulk-checkin machinery, we
> can introduce a variant of `index_blob_bulk_checkin()` that acts on
> blobs whose contents we can fit in memory.

Hmph.

Doesn't the duplication between the main loop of the new
deflate_obj_contents_to_pack() with existing deflate_blob_to_pack()
bother you?

A similar duplication in the previous round resulted in a nice
refactoring of patches 5 and 6 in this round.  Compared to that,
the differences in the set-up code between the two functions may be
much larger, but subtle and unnecessary differences between the code
that was copied and pasted (e.g., we do not check the errors from
the seek_to method here, but the original does) is a sign that over
time a fix to one will need to be carried over to the other, adding
unnecessary maintenance burden, isn't it?

> +static int deflate_obj_contents_to_pack_incore(struct bulk_checkin_packfile *state,
> +					       git_hash_ctx *ctx,
> +					       struct hashfile_checkpoint *checkpoint,
> +					       struct object_id *result_oid,
> +					       const void *buf, size_t size,
> +					       enum object_type type,
> +					       const char *path, unsigned flags)
> +{
> +	struct pack_idx_entry *idx = NULL;
> +	off_t already_hashed_to = 0;
> +	struct bulk_checkin_source source = {
> +		.type = SOURCE_INCORE,
> +		.buf = buf,
> +		.size = size,
> +		.read = 0,
> +		.path = path,
> +	};
> +
> +	/* Note: idx is non-NULL when we are writing */
> +	if (flags & HASH_WRITE_OBJECT)
> +		CALLOC_ARRAY(idx, 1);
> +
> +	while (1) {
> +		prepare_checkpoint(state, checkpoint, idx, flags);
> +
> +		if (!stream_obj_to_pack(state, ctx, &already_hashed_to, &source,
> +					type, flags))
> +			break;
> +		truncate_checkpoint(state, checkpoint, idx);
> +		bulk_checkin_source_seek_to(&source, 0);
> +	}
> +
> +	finalize_checkpoint(state, ctx, checkpoint, idx, result_oid);
> +
> +	return 0;
> +}
> +
> +static int deflate_blob_to_pack_incore(struct bulk_checkin_packfile *state,
> +				       struct object_id *result_oid,
> +				       const void *buf, size_t size,
> +				       const char *path, unsigned flags)
> +{
> +	git_hash_ctx ctx;
> +	struct hashfile_checkpoint checkpoint = {0};
> +
> +	format_object_header_hash(the_hash_algo, &ctx, &checkpoint, OBJ_BLOB,
> +				  size);
> +
> +	return deflate_obj_contents_to_pack_incore(state, &ctx, &checkpoint,
> +						   result_oid, buf, size,
> +						   OBJ_BLOB, path, flags);
> +}
> +
>  static int deflate_blob_to_pack(struct bulk_checkin_packfile *state,
>  				struct object_id *result_oid,
>  				int fd, size_t size,
> @@ -456,6 +509,17 @@ int index_blob_bulk_checkin(struct object_id *oid,
>  	return status;
>  }
>  
> +int index_blob_bulk_checkin_incore(struct object_id *oid,
> +				   const void *buf, size_t size,
> +				   const char *path, unsigned flags)
> +{
> +	int status = deflate_blob_to_pack_incore(&bulk_checkin_packfile, oid,
> +						 buf, size, path, flags);
> +	if (!odb_transaction_nesting)
> +		flush_bulk_checkin_packfile(&bulk_checkin_packfile);
> +	return status;
> +}
> +
>  void begin_odb_transaction(void)
>  {
>  	odb_transaction_nesting += 1;
> diff --git a/bulk-checkin.h b/bulk-checkin.h
> index aa7286a7b3..1b91daeaee 100644
> --- a/bulk-checkin.h
> +++ b/bulk-checkin.h
> @@ -13,6 +13,10 @@ int index_blob_bulk_checkin(struct object_id *oid,
>  			    int fd, size_t size,
>  			    const char *path, unsigned flags);
>  
> +int index_blob_bulk_checkin_incore(struct object_id *oid,
> +				   const void *buf, size_t size,
> +				   const char *path, unsigned flags);
> +
>  /*
>   * Tell the object database to optimize for adding
>   * multiple objects. end_odb_transaction must be called

Re: [PATCH v4 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

> (Rebased onto the tip of 'master', which is 3a06386e31 (The fifteenth
> batch, 2023-10-04), at the time of writing).

Judging from 17/17 that has a free_commit_graph() call in
close_commit_graph(), that was merged in the eighteenth batch,
the above is probably untrue.  I'll apply to the current master and
see how it goes instead.

> Thanks to Jonathan, Peff, and SZEDER who have helped a great deal in
> assembling these patches. As usual, a range-diff is included below.
> Thanks in advance for your
> review!

Thanks.

Re: [PATCH v3 05/10] bulk-checkin: extract abstract `bulk_checkin_source`

[Taylor Blau]

On Wed, Oct 18, 2023 at 04:10:43PM -0700, Junio C Hamano wrote:
> Looks OK, even though I expected to see a bit more involved object
> orientation with something like
>
> 	struct bulk_checkin_source {
> 		off_t (*read)(struct bulk_checkin_source *, void *, size_t);
> 		off_t (*seek)(struct bulk_checkin_source *, off_t);
> 		union {
> 			struct {
> 				int fd;
> 				size_t size;
> 				const char *path;
> 			} from_fd;
> 			struct {
> 				...
> 			} incore;
> 		} data;
> 	};
>
> As there will only be two subclasses of this thing, it may not
> matter all that much right now, but it would be much nicer as your
> methods do not have to care about "switch (enum) { case FILE: ... }".

I want to be cautious of going too far in this direction. I anticipate
that "two" is probably the maximum number of kinds of sources we can
reasonably expect for the foreseeable future. If that changes, it's easy
enough to convert from the existing implementation to something closer
to the above.

Thanks,
Taylor

Re: [PATCH v3 08/10] bulk-checkin: introduce `index_blob_bulk_checkin_incore()`

[Taylor Blau]

On Wed, Oct 18, 2023 at 04:18:23PM -0700, Junio C Hamano wrote:
> Taylor Blau <me@ttaylorr.com> writes:
>
> > Now that we have factored out many of the common routines necessary to
> > index a new object into a pack created by the bulk-checkin machinery, we
> > can introduce a variant of `index_blob_bulk_checkin()` that acts on
> > blobs whose contents we can fit in memory.
>
> Hmph.
>
> Doesn't the duplication between the main loop of the new
> deflate_obj_contents_to_pack() with existing deflate_blob_to_pack()
> bother you?

Yeah, I am not sure how I missed seeing the opportunity to clean that
up. Another (hopefully final...) reroll incoming.

Thanks,
Taylor

Re: [PATCH v3 05/10] bulk-checkin: extract abstract `bulk_checkin_source`

[Junio C Hamano]

Taylor Blau <me@ttaylorr.com> writes:

> I want to be cautious of going too far in this direction.

That's fine.  Thanks.

Re: [PATCH v4 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[Taylor Blau]

On Wed, Oct 18, 2023 at 04:26:48PM -0700, Junio C Hamano wrote:
> Taylor Blau <me@ttaylorr.com> writes:
>
> > (Rebased onto the tip of 'master', which is 3a06386e31 (The fifteenth
> > batch, 2023-10-04), at the time of writing).
>
> Judging from 17/17 that has a free_commit_graph() call in
> close_commit_graph(), that was merged in the eighteenth batch,
> the above is probably untrue.  I'll apply to the current master and
> see how it goes instead.

Worse than that, I sent this `--in-reply-to` the wrong thread :-<.

Sorry about that, and indeed you are right that the correct base for
this round should be a9ecda2788 (The eighteenth batch, 2023-10-13).

I'm optimistic that with the amount of careful review that this topic
has already received, that this round should do the trick. But if there
are more comments and we end up re-rolling it, I'll break this thread
and split out the v5 into it's thread to avoid further confusion.

> > Thanks to Jonathan, Peff, and SZEDER who have helped a great deal in
> > assembling these patches. As usual, a range-diff is included below.
> > Thanks in advance for your
> > review!
>
> Thanks.

Thank you, and sorry for the mistake on my end.

Thanks,
Taylor

Re: [PATCH v4 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[SZEDER Gábor]

On Fri, Oct 20, 2023 at 01:27:00PM -0400, Taylor Blau wrote:
> On Wed, Oct 18, 2023 at 04:26:48PM -0700, Junio C Hamano wrote:
> > Taylor Blau <me@ttaylorr.com> writes:
> >
> > > (Rebased onto the tip of 'master', which is 3a06386e31 (The fifteenth
> > > batch, 2023-10-04), at the time of writing).
> >
> > Judging from 17/17 that has a free_commit_graph() call in
> > close_commit_graph(), that was merged in the eighteenth batch,
> > the above is probably untrue.  I'll apply to the current master and
> > see how it goes instead.
> 
> Worse than that, I sent this `--in-reply-to` the wrong thread :-<.
> 
> Sorry about that, and indeed you are right that the correct base for
> this round should be a9ecda2788 (The eighteenth batch, 2023-10-13).
> 
> I'm optimistic that with the amount of careful review that this topic
> has already received, that this round should do the trick.

Unfortunately, I can't share this optimism.  This series still lacks
tests exercising the interaction of different versions of Bloom
filters and split commit graphs, and the one such test that I sent a
while ago demonstrates that it's still broken.  And it's getting
worse: back then I didn't send the related test that merged
commit-graph layers containing different Bloom filter versions,
because happened to succeed even back then; but, alas, with this
series even that test fails.

Re: [PATCH v4 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[Taylor Blau]

On Mon, Oct 23, 2023 at 10:22:12PM +0200, SZEDER Gábor wrote:
> On Fri, Oct 20, 2023 at 01:27:00PM -0400, Taylor Blau wrote:
> > I'm optimistic that with the amount of careful review that this topic
> > has already received, that this round should do the trick.
>
> Unfortunately, I can't share this optimism.  This series still lacks
> tests exercising the interaction of different versions of Bloom
> filters and split commit graphs, and the one such test that I sent a
> while ago demonstrates that it's still broken.  And it's getting
> worse: back then I didn't send the related test that merged
> commit-graph layers containing different Bloom filter versions,
> because happened to succeed even back then; but, alas, with this
> series even that test fails.

I am very confused here, the tests that you're referring to have been
added to (and pass in) this series. What am I missing here?

Thanks,
Taylor

[PATCH v5 00/17] bloom: changed-path Bloom filters v2 (& sundries)

[Taylor Blau]

(Rebased onto the tip of 'master', which is d4dbce1db5 (The seventh
batch, 2024-01-12), at the time of writing).

This series is a reroll of the combined efforts of [1] and [2] to
introduce the v2 changed-path Bloom filters, which fixes a bug in our
existing implementation of murmur3 paths with non-ASCII characters (when
the "char" type is signed).

In large part, this is the same as the previous round. Like last time,
this round addresses the remaining additional issues pointed out by
SZEDER Gábor. The remaining issues which have been addressed by this
series are:

  - Incorrectly reading Bloom filters computed with differing hash
    versions. This has been corrected by discarding them when a version
    mismatch is detected.

  - Added a note about the new `commitGraph.changedPathVersion`
    configuration variable which can cause (un-fixable, see [3])
    issues in earlier versions of Git which do not yet understand them.

Thanks to Jonathan, Peff, and SZEDER who have helped a great deal in
assembling these patches. As usual, a range-diff is included below.

Thanks in advance for your review!

[1]: https://lore.kernel.org/git/cover.1684790529.git.jonathantanmy@google.com/
[2]: https://lore.kernel.org/git/cover.1691426160.git.me@ttaylorr.com/
[3]: https://lore.kernel.org/git/Zabr1Glljjgl%2FUUB@nand.local/

Jonathan Tan (1):
  gitformat-commit-graph: describe version 2 of BDAT

Taylor Blau (16):
  t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`
  revision.c: consult Bloom filters for root commits
  commit-graph: ensure Bloom filters are read with consistent settings
  t/helper/test-read-graph.c: extract `dump_graph_info()`
  bloom.h: make `load_bloom_filter_from_graph()` public
  t/helper/test-read-graph: implement `bloom-filters` mode
  t4216: test changed path filters with high bit paths
  repo-settings: introduce commitgraph.changedPathsVersion
  commit-graph: new Bloom filter version that fixes murmur3
  bloom: annotate filters with hash version
  bloom: prepare to discard incompatible Bloom filters
  commit-graph.c: unconditionally load Bloom filters
  commit-graph: drop unnecessary `graph_read_bloom_data_context`
  object.h: fix mis-aligned flag bits table
  commit-graph: reuse existing Bloom filters where possible
  bloom: introduce `deinit_bloom_filters()`

 Documentation/config/commitgraph.txt     |  29 ++-
 Documentation/gitformat-commit-graph.txt |   9 +-
 bloom.c                                  | 208 ++++++++++++++-
 bloom.h                                  |  38 ++-
 commit-graph.c                           |  64 ++++-
 object.h                                 |   3 +-
 oss-fuzz/fuzz-commit-graph.c             |   2 +-
 repo-settings.c                          |   6 +-
 repository.h                             |   2 +-
 revision.c                               |  26 +-
 t/helper/test-bloom.c                    |   9 +-
 t/helper/test-read-graph.c               |  67 ++++-
 t/t0095-bloom.sh                         |   8 +
 t/t4216-log-bloom.sh                     | 310 ++++++++++++++++++++++-
 14 files changed, 724 insertions(+), 57 deletions(-)

Range-diff against v4:
 1:  e0fc51c3fb !  1:  c5e1b3e507 t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`
    @@ Commit message
         checking for the absence of any data from it from trace2.
     
         In the following commit, it will become possible to load Bloom filters
    -    without using them (e.g., because `commitGraph.changedPathVersion` is
    -    incompatible with the hash version with which the commit-graph's Bloom
    -    filters were written).
    +    without using them (e.g., because the `commitGraph.changedPathVersion`
    +    introduced later in this series is incompatible with the hash version
    +    with which the commit-graph's Bloom filters were written).
     
         When this is the case, it's possible to initialize the Bloom filter
         sub-system, while still not using any Bloom filters. When this is the
 2:  87b09e6266 !  2:  8f32fd5f46 revision.c: consult Bloom filters for root commits
    @@ revision.c: static int rev_compare_tree(struct rev_info *revs,
     +				  int nth_parent)
      {
      	struct tree *t1 = repo_get_commit_tree(the_repository, commit);
    -+	int bloom_ret = 1;
    ++	int bloom_ret = -1;
      
      	if (!t1)
      		return 0;
      
    -+	if (nth_parent == 1 && revs->bloom_keys_nr) {
    ++	if (!nth_parent && revs->bloom_keys_nr) {
     +		bloom_ret = check_maybe_different_in_bloom_filter(revs, commit);
     +		if (!bloom_ret)
     +			return 1;
    @@ revision.c: static void try_to_simplify_commit(struct rev_info *revs, struct com
     +		 * (if one exists) is relative to the empty tree, using Bloom
     +		 * filters is allowed here.
     +		 */
    -+		if (rev_same_tree_as_empty(revs, commit, 1))
    ++		if (rev_same_tree_as_empty(revs, commit, 0))
      			commit->object.flags |= TREESAME;
      		return;
      	}
 3:  46d8a41005 !  3:  285b25f1b7 commit-graph: ensure Bloom filters are read with consistent settings
    @@ t/t4216-log-bloom.sh: test_expect_success 'Bloom generation backfills empty comm
     +	test_must_be_empty err
     +'
     +
    - test_done
    + corrupt_graph () {
    +-	graph=.git/objects/info/commit-graph &&
    + 	test_when_finished "rm -rf $graph" &&
    + 	git commit-graph write --reachable --changed-paths &&
    + 	corrupt_chunk_file $graph "$@"
 4:  4d0190a992 =  4:  0cee8078d4 gitformat-commit-graph: describe version 2 of BDAT
 5:  3c2057c11c =  5:  1fc8d2828d t/helper/test-read-graph.c: extract `dump_graph_info()`
 6:  e002e35004 !  6:  03dd7cf30a bloom.h: make `load_bloom_filter_from_graph()` public
    @@ Commit message
         Signed-off-by: Taylor Blau <me@ttaylorr.com>
     
      ## bloom.c ##
    -@@ bloom.c: static inline unsigned char get_bitmask(uint32_t pos)
    - 	return ((unsigned char)1) << (pos & (BITS_PER_WORD - 1));
    +@@ bloom.c: static int check_bloom_offset(struct commit_graph *g, uint32_t pos,
    + 	return -1;
      }
      
     -static int load_bloom_filter_from_graph(struct commit_graph *g,
 7:  c7016f51cd =  7:  dd9193e404 t/helper/test-read-graph: implement `bloom-filters` mode
 8:  cef2aac8ba !  8:  aa2416795d t4216: test changed path filters with high bit paths
    @@
      ## Metadata ##
    -Author: Jonathan Tan <jonathantanmy@google.com>
    +Author: Taylor Blau <me@ttaylorr.com>
     
      ## Commit message ##
         t4216: test changed path filters with high bit paths
    @@ t/t4216-log-bloom.sh: test_expect_success 'merge graph layers with incompatible
     +	)
     +'
     +
    - test_done
    + corrupt_graph () {
    + 	test_when_finished "rm -rf $graph" &&
    + 	git commit-graph write --reachable --changed-paths &&
 9:  36d4e2202e !  9:  a77dcc99b4 repo-settings: introduce commitgraph.changedPathsVersion
    @@
      ## Metadata ##
    -Author: Jonathan Tan <jonathantanmy@google.com>
    +Author: Taylor Blau <me@ttaylorr.com>
     
      ## Commit message ##
         repo-settings: introduce commitgraph.changedPathsVersion
    @@ Documentation/config/commitgraph.txt: commitGraph.maxNewFilters::
     +
     +commitGraph.changedPathsVersion::
     +	Specifies the version of the changed-path Bloom filters that Git will read and
    -+	write. May be -1, 0 or 1.
    ++	write. May be -1, 0 or 1. Note that values greater than 1 may be
    ++	incompatible with older versions of Git which do not yet understand
    ++	those versions. Use caution when operating in a mixed-version
    ++	environment.
     ++
     +Defaults to -1.
     ++
    @@ commit-graph.c: struct commit_graph *parse_commit_graph(struct repo_settings *s,
      
     -	if (s->commit_graph_read_changed_paths) {
     +	if (s->commit_graph_changed_paths_version) {
    - 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    - 			   &graph->chunk_bloom_indexes);
    + 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    + 			   graph_read_bloom_index, graph);
      		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
    +@@ commit-graph.c: static void validate_mixed_bloom_settings(struct commit_graph *g)
    + 		}
    + 
    + 		if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry ||
    +-		    g->bloom_filter_settings->num_hashes != settings->num_hashes) {
    ++		    g->bloom_filter_settings->num_hashes != settings->num_hashes ||
    ++		    g->bloom_filter_settings->hash_version != settings->hash_version) {
    + 			g->chunk_bloom_indexes = NULL;
    + 			g->chunk_bloom_data = NULL;
    + 			FREE_AND_NULL(g->bloom_filter_settings);
     
      ## oss-fuzz/fuzz-commit-graph.c ##
     @@ oss-fuzz/fuzz-commit-graph.c: int LLVMFuzzerTestOneInput(const uint8_t *data, size_t size)
    @@ repository.h: struct repo_settings {
      	int gc_write_commit_graph;
      	int fetch_write_commit_graph;
      	int command_requires_full_index;
    +
    + ## t/t4216-log-bloom.sh ##
    +@@ t/t4216-log-bloom.sh: test_expect_success 'setup for mixed Bloom setting tests' '
    + 	done
    + '
    + 
    +-test_expect_success 'ensure incompatible Bloom filters are ignored' '
    ++test_expect_success 'ensure Bloom filters with incompatible settings are ignored' '
    + 	# Compute Bloom filters with "unusual" settings.
    + 	git -C $repo rev-parse one >in &&
    + 	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
    +@@ t/t4216-log-bloom.sh: test_expect_success 'merge graph layers with incompatible Bloom settings' '
    + 	test_must_be_empty err
    + '
    + 
    ++test_expect_success 'ensure Bloom filter with incompatible versions are ignored' '
    ++	rm "$repo/$graph" &&
    ++
    ++	git -C $repo log --oneline --no-decorate -- $CENT >expect &&
    ++
    ++	# Compute v1 Bloom filters for commits at the bottom.
    ++	git -C $repo rev-parse HEAD^ >in &&
    ++	git -C $repo commit-graph write --stdin-commits --changed-paths \
    ++		--split <in &&
    ++
    ++	# Compute v2 Bloomfilters for the rest of the commits at the top.
    ++	git -C $repo rev-parse HEAD >in &&
    ++	git -C $repo -c commitGraph.changedPathsVersion=2 commit-graph write \
    ++		--stdin-commits --changed-paths --split=no-merge <in &&
    ++
    ++	test_line_count = 2 $repo/$chain &&
    ++
    ++	git -C $repo log --oneline --no-decorate -- $CENT >actual 2>err &&
    ++	test_cmp expect actual &&
    ++
    ++	layer="$(head -n 1 $repo/$chain)" &&
    ++	cat >expect.err <<-EOF &&
    ++	warning: disabling Bloom filters for commit-graph layer $SQ$layer$SQ due to incompatible settings
    ++	EOF
    ++	test_cmp expect.err err
    ++'
    ++
    + get_first_changed_path_filter () {
    + 	test-tool read-graph bloom-filters >filters.dat &&
    + 	head -n 1 filters.dat
10:  f6ab427ead ! 10:  f0f22e852c commit-graph: new filter ver. that fixes murmur3
    @@
      ## Metadata ##
    -Author: Jonathan Tan <jonathantanmy@google.com>
    +Author: Taylor Blau <me@ttaylorr.com>
     
      ## Commit message ##
    -    commit-graph: new filter ver. that fixes murmur3
    +    commit-graph: new Bloom filter version that fixes murmur3
     
         The murmur3 implementation in bloom.c has a bug when converting series
         of 4 bytes into network-order integers when char is signed (which is
    @@ Documentation/config/commitgraph.txt: commitGraph.readChangedPaths::
      
      commitGraph.changedPathsVersion::
      	Specifies the version of the changed-path Bloom filters that Git will read and
    --	write. May be -1, 0 or 1.
    -+	write. May be -1, 0, 1, or 2.
    - +
    - Defaults to -1.
    - +
    +-	write. May be -1, 0 or 1. Note that values greater than 1 may be
    ++	write. May be -1, 0, 1, or 2. Note that values greater than 1 may be
    + 	incompatible with older versions of Git which do not yet understand
    + 	those versions. Use caution when operating in a mixed-version
    + 	environment.
     @@ Documentation/config/commitgraph.txt: filters when instructed to write.
      If 1, Git will only read version 1 Bloom filters, and will write version 1
      Bloom filters.
    @@ bloom.h: int load_bloom_filter_from_graph(struct commit_graph *g,
      		    size_t len,
     
      ## commit-graph.c ##
    -@@ commit-graph.c: static int graph_read_oid_lookup(const unsigned char *chunk_start,
    +@@ commit-graph.c: static int graph_read_bloom_index(const unsigned char *chunk_start,
      	return 0;
      }
      
    @@ commit-graph.c: static int graph_read_oid_lookup(const unsigned char *chunk_star
     +	struct graph_read_bloom_data_context *c = data;
     +	struct commit_graph *g = c->g;
      	uint32_t hash_version;
    --	g->chunk_bloom_data = chunk_start;
    - 	hash_version = get_be32(chunk_start);
      
    --	if (hash_version != 1)
    -+	if (*c->commit_graph_changed_paths_version == -1) {
    + 	if (chunk_size < BLOOMDATA_CHUNK_HEADER_SIZE) {
    +@@ commit-graph.c: static int graph_read_bloom_data(const unsigned char *chunk_start,
    + 		return -1;
    + 	}
    + 
    ++	hash_version = get_be32(chunk_start);
    ++
    ++	if (*c->commit_graph_changed_paths_version == -1)
     +		*c->commit_graph_changed_paths_version = hash_version;
    -+	} else if (hash_version != *c->commit_graph_changed_paths_version) {
    - 		return 0;
    -+	}
    - 
    -+	g->chunk_bloom_data = chunk_start;
    ++	else if (hash_version != *c->commit_graph_changed_paths_version)
    ++		return 0;
    ++
    + 	g->chunk_bloom_data = chunk_start;
    + 	g->chunk_bloom_data_size = chunk_size;
    +-	hash_version = get_be32(chunk_start);
    +-
    +-	if (hash_version != 1)
    +-		return 0;
    +-
      	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
      	g->bloom_filter_settings->hash_version = hash_version;
      	g->bloom_filter_settings->num_hashes = get_be32(chunk_start + 4);
    @@ commit-graph.c: struct commit_graph *parse_commit_graph(struct repo_settings *s,
     +			.g = graph,
     +			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
     +		};
    - 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    - 			   &graph->chunk_bloom_indexes);
    + 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    + 			   graph_read_bloom_index, graph);
      		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
     -			   graph_read_bloom_data, graph);
     +			   graph_read_bloom_data, &context);
    @@ t/t4216-log-bloom.sh: test_expect_success 'version 1 changed-path used when vers
     +	)
     +'
     +
    - test_done
    + corrupt_graph () {
    + 	test_when_finished "rm -rf $graph" &&
    + 	git commit-graph write --reachable --changed-paths &&
11:  dc69b28329 = 11:  b56e94cad7 bloom: annotate filters with hash version
12:  85dbdc4ed2 = 12:  ddfd1ba32a bloom: prepare to discard incompatible Bloom filters
13:  3ff669a622 ! 13:  72aabd289b commit-graph.c: unconditionally load Bloom filters
    @@ Metadata
      ## Commit message ##
         commit-graph.c: unconditionally load Bloom filters
     
    -    In 9e4df4da07 (commit-graph: new filter ver. that fixes murmur3,
    -    2023-08-01), we began ignoring the Bloom data ("BDAT") chunk for
    -    commit-graphs whose Bloom filters were computed using a hash version
    -    incompatible with the value of `commitGraph.changedPathVersion`.
    +    In an earlier commit, we began ignoring the Bloom data ("BDAT") chunk
    +    for commit-graphs whose Bloom filters were computed using a hash version
    +      incompatible with the value of `commitGraph.changedPathVersion`.
     
         Now that the Bloom API has been hardened to discard these incompatible
         filters (with the exception of low-level APIs), we can safely load these
    @@ Commit message
     
      ## commit-graph.c ##
     @@ commit-graph.c: static int graph_read_bloom_data(const unsigned char *chunk_start,
    - 	uint32_t hash_version;
    + 
      	hash_version = get_be32(chunk_start);
      
    --	if (*c->commit_graph_changed_paths_version == -1) {
    +-	if (*c->commit_graph_changed_paths_version == -1)
     -		*c->commit_graph_changed_paths_version = hash_version;
    --	} else if (hash_version != *c->commit_graph_changed_paths_version) {
    +-	else if (hash_version != *c->commit_graph_changed_paths_version)
     -		return 0;
    --	}
     -
      	g->chunk_bloom_data = chunk_start;
    + 	g->chunk_bloom_data_size = chunk_size;
      	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
    - 	g->bloom_filter_settings->hash_version = hash_version;
     @@ commit-graph.c: int write_commit_graph(struct object_directory *odb,
      	ctx->write_generation_data = (get_configured_generation_version(r) == 2);
      	ctx->num_generation_data_overflows = 0;
14:  1c78e3d178 ! 14:  526beb9766 commit-graph: drop unnecessary `graph_read_bloom_data_context`
    @@ Commit message
         Signed-off-by: Taylor Blau <me@ttaylorr.com>
     
      ## commit-graph.c ##
    -@@ commit-graph.c: static int graph_read_oid_lookup(const unsigned char *chunk_start,
    +@@ commit-graph.c: static int graph_read_bloom_index(const unsigned char *chunk_start,
      	return 0;
      }
      
    @@ commit-graph.c: static int graph_read_oid_lookup(const unsigned char *chunk_star
     -	struct commit_graph *g = c->g;
     +	struct commit_graph *g = data;
      	uint32_t hash_version;
    - 	hash_version = get_be32(chunk_start);
      
    + 	if (chunk_size < BLOOMDATA_CHUNK_HEADER_SIZE) {
     @@ commit-graph.c: struct commit_graph *parse_commit_graph(struct repo_settings *s,
      	}
      
    @@ commit-graph.c: struct commit_graph *parse_commit_graph(struct repo_settings *s,
     -			.g = graph,
     -			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
     -		};
    - 		pair_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    - 			   &graph->chunk_bloom_indexes);
    + 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
    + 			   graph_read_bloom_index, graph);
      		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
     -			   graph_read_bloom_data, &context);
     +			   graph_read_bloom_data, graph);
15:  a289514faa = 15:  c683697efa object.h: fix mis-aligned flag bits table
16:  6a12e39e7f ! 16:  4bf043be9a commit-graph: reuse existing Bloom filters where possible
    @@ Metadata
      ## Commit message ##
         commit-graph: reuse existing Bloom filters where possible
     
    -    In 9e4df4da07 (commit-graph: new filter ver. that fixes murmur3,
    -    2023-08-01), a bug was described where it's possible for Git to produce
    -    non-murmur3 hashes when the platform's "char" type is signed, and there
    -    are paths with characters whose highest bit is set (i.e. all characters
    -    >= 0x80).
    +    In an earlier commit, a bug was described where it's possible for Git to
    +    produce non-murmur3 hashes when the platform's "char" type is signed,
    +    and there are paths with characters whose highest bit is set (i.e. all
    +    characters >= 0x80).
     
         That patch allows the caller to control which version of Bloom filters
         are read and written. However, even on platforms with a signed "char"
    @@ t/t4216-log-bloom.sh: test_expect_success 'when writing commit graph, do not reu
     +	test_filter_upgraded 1 trace2.txt
     +'
     +
    - test_done
    + corrupt_graph () {
    + 	test_when_finished "rm -rf $graph" &&
    + 	git commit-graph write --reachable --changed-paths &&
17:  8942f205c8 = 17:  7daa0d8833 bloom: introduce `deinit_bloom_filters()`

base-commit: d4dbce1db5cd227a57074bcfc7ec9f0655961bba
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 01/17] t/t4216-log-bloom.sh: harden `test_bloom_filters_not_used()`

[Taylor Blau]

The existing implementation of test_bloom_filters_not_used() asserts
that the Bloom filter sub-system has not been initialized at all, by
checking for the absence of any data from it from trace2.

In the following commit, it will become possible to load Bloom filters
without using them (e.g., because the `commitGraph.changedPathVersion`
introduced later in this series is incompatible with the hash version
with which the commit-graph's Bloom filters were written).

When this is the case, it's possible to initialize the Bloom filter
sub-system, while still not using any Bloom filters. When this is the
case, check that the data dump from the Bloom sub-system is all zeros,
indicating that no filters were used.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/t4216-log-bloom.sh | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 2ba0324a69..b7baf49d62 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -82,7 +82,19 @@ test_bloom_filters_used () {
 test_bloom_filters_not_used () {
 	log_args=$1
 	setup "$log_args" &&
-	! grep -q "statistics:{\"filter_not_present\":" "$TRASH_DIRECTORY/trace.perf" &&
+
+	if grep -q "statistics:{\"filter_not_present\":" "$TRASH_DIRECTORY/trace.perf"
+	then
+		# if the Bloom filter system is initialized, ensure that no
+		# filters were used
+		data="statistics:{"
+		data="$data\"filter_not_present\":0,"
+		data="$data\"maybe\":0,"
+		data="$data\"definitely_not\":0,"
+		data="$data\"false_positive\":0}"
+
+		grep -q "$data" "$TRASH_DIRECTORY/trace.perf"
+	fi &&
 	test_cmp log_wo_bloom log_w_bloom
 }
 
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 02/17] revision.c: consult Bloom filters for root commits

[Taylor Blau]

The commit-graph stores changed-path Bloom filters which represent the
set of paths included in a tree-level diff between a commit's root tree
and that of its parent.

When a commit has no parents, the tree-diff is computed against that
commit's root tree and the empty tree. In other words, every path in
that commit's tree is stored in the Bloom filter (since they all appear
in the diff).

Consult these filters during pathspec-limited traversals in the function
`rev_same_tree_as_empty()`. Doing so yields a performance improvement
where we can avoid enumerating the full set of paths in a parentless
commit's root tree when we know that the path(s) of interest were not
listed in that commit's changed-path Bloom filter.

Suggested-by: SZEDER Gábor <szeder.dev@gmail.com>
Original-patch-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 revision.c           | 26 ++++++++++++++++++++++----
 t/t4216-log-bloom.sh |  8 ++++++--
 2 files changed, 28 insertions(+), 6 deletions(-)

diff --git a/revision.c b/revision.c
index 2424c9bd67..0e6f7d02b6 100644
--- a/revision.c
+++ b/revision.c
@@ -833,17 +833,28 @@ static int rev_compare_tree(struct rev_info *revs,
 	return tree_difference;
 }
 
-static int rev_same_tree_as_empty(struct rev_info *revs, struct commit *commit)
+static int rev_same_tree_as_empty(struct rev_info *revs, struct commit *commit,
+				  int nth_parent)
 {
 	struct tree *t1 = repo_get_commit_tree(the_repository, commit);
+	int bloom_ret = -1;
 
 	if (!t1)
 		return 0;
 
+	if (!nth_parent && revs->bloom_keys_nr) {
+		bloom_ret = check_maybe_different_in_bloom_filter(revs, commit);
+		if (!bloom_ret)
+			return 1;
+	}
+
 	tree_difference = REV_TREE_SAME;
 	revs->pruning.flags.has_changes = 0;
 	diff_tree_oid(NULL, &t1->object.oid, "", &revs->pruning);
 
+	if (bloom_ret == 1 && tree_difference == REV_TREE_SAME)
+		count_bloom_filter_false_positive++;
+
 	return tree_difference == REV_TREE_SAME;
 }
 
@@ -881,7 +892,7 @@ static int compact_treesame(struct rev_info *revs, struct commit *commit, unsign
 		if (nth_parent != 0)
 			die("compact_treesame %u", nth_parent);
 		old_same = !!(commit->object.flags & TREESAME);
-		if (rev_same_tree_as_empty(revs, commit))
+		if (rev_same_tree_as_empty(revs, commit, nth_parent))
 			commit->object.flags |= TREESAME;
 		else
 			commit->object.flags &= ~TREESAME;
@@ -977,7 +988,14 @@ static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit)
 		return;
 
 	if (!commit->parents) {
-		if (rev_same_tree_as_empty(revs, commit))
+		/*
+		 * Pretend as if we are comparing ourselves to the
+		 * (non-existent) first parent of this commit object. Even
+		 * though no such parent exists, its changed-path Bloom filter
+		 * (if one exists) is relative to the empty tree, using Bloom
+		 * filters is allowed here.
+		 */
+		if (rev_same_tree_as_empty(revs, commit, 0))
 			commit->object.flags |= TREESAME;
 		return;
 	}
@@ -1058,7 +1076,7 @@ static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit)
 
 		case REV_TREE_NEW:
 			if (revs->remove_empty_trees &&
-			    rev_same_tree_as_empty(revs, p)) {
+			    rev_same_tree_as_empty(revs, p, nth_parent)) {
 				/* We are adding all the specified
 				 * paths from this parent, so the
 				 * history beyond this parent is not
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index b7baf49d62..cc6ebc8140 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -88,7 +88,11 @@ test_bloom_filters_not_used () {
 		# if the Bloom filter system is initialized, ensure that no
 		# filters were used
 		data="statistics:{"
-		data="$data\"filter_not_present\":0,"
+		# unusable filters (e.g., those computed with a
+		# different value of commitGraph.changedPathsVersion)
+		# are counted in the filter_not_present bucket, so any
+		# value is OK there.
+		data="$data\"filter_not_present\":[0-9][0-9]*,"
 		data="$data\"maybe\":0,"
 		data="$data\"definitely_not\":0,"
 		data="$data\"false_positive\":0}"
@@ -175,7 +179,7 @@ test_expect_success 'setup - add commit-graph to the chain with Bloom filters' '
 
 test_bloom_filters_used_when_some_filters_are_missing () {
 	log_args=$1
-	bloom_trace_prefix="statistics:{\"filter_not_present\":3,\"maybe\":6,\"definitely_not\":9"
+	bloom_trace_prefix="statistics:{\"filter_not_present\":3,\"maybe\":6,\"definitely_not\":10"
 	setup "$log_args" &&
 	grep -q "$bloom_trace_prefix" "$TRASH_DIRECTORY/trace.perf" &&
 	test_cmp log_wo_bloom log_w_bloom
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 03/17] commit-graph: ensure Bloom filters are read with consistent settings

[Taylor Blau]

The changed-path Bloom filter mechanism is parameterized by a couple of
variables, notably the number of bits per hash (typically "m" in Bloom
filter literature) and the number of hashes themselves (typically "k").

It is critically important that filters are read with the Bloom filter
settings that they were written with. Failing to do so would mean that
each query is liable to compute different fingerprints, meaning that the
filter itself could return a false negative. This goes against a basic
assumption of using Bloom filters (that they may return false positives,
but never false negatives) and can lead to incorrect results.

We have some existing logic to carry forward existing Bloom filter
settings from one layer to the next. In `write_commit_graph()`, we have
something like:

    if (!(flags & COMMIT_GRAPH_NO_WRITE_BLOOM_FILTERS)) {
        struct commit_graph *g = ctx->r->objects->commit_graph;

        /* We have changed-paths already. Keep them in the next graph */
        if (g && g->chunk_bloom_data) {
            ctx->changed_paths = 1;
            ctx->bloom_settings = g->bloom_filter_settings;
        }
    }

, which drags forward Bloom filter settings across adjacent layers.

This doesn't quite address all cases, however, since it is possible for
intermediate layers to contain no Bloom filters at all. For example,
suppose we have two layers in a commit-graph chain, say, {G1, G2}. If G1
contains Bloom filters, but G2 doesn't, a new G3 (whose base graph is
G2) may be written with arbitrary Bloom filter settings, because we only
check the immediately adjacent layer's settings for compatibility.

This behavior has existed since the introduction of changed-path Bloom
filters. But in practice, this is not such a big deal, since the only
way up until this point to modify the Bloom filter settings at write
time is with the undocumented environment variables:

  - GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY
  - GIT_TEST_BLOOM_SETTINGS_NUM_HASHES
  - GIT_TEST_BLOOM_SETTINGS_MAX_CHANGED_PATHS

(it is still possible to tweak MAX_CHANGED_PATHS between layers, but
this does not affect reads, so is allowed to differ across multiple
graph layers).

But in future commits, we will introduce another parameter to change the
hash algorithm used to compute Bloom fingerprints itself. This will be
exposed via a configuration setting, making this foot-gun easier to use.

To prevent this potential issue, validate that all layers of a split
commit-graph have compatible settings with the newest layer which
contains Bloom filters.

Reported-by: SZEDER Gábor <szeder.dev@gmail.com>
Original-test-by: SZEDER Gábor <szeder.dev@gmail.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c       | 25 +++++++++++++++++
 t/t4216-log-bloom.sh | 65 +++++++++++++++++++++++++++++++++++++++++++-
 2 files changed, 89 insertions(+), 1 deletion(-)

diff --git a/commit-graph.c b/commit-graph.c
index bba316913c..00113b0f62 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -543,6 +543,30 @@ static int validate_mixed_generation_chain(struct commit_graph *g)
 	return 0;
 }
 
+static void validate_mixed_bloom_settings(struct commit_graph *g)
+{
+	struct bloom_filter_settings *settings = NULL;
+	for (; g; g = g->base_graph) {
+		if (!g->bloom_filter_settings)
+			continue;
+		if (!settings) {
+			settings = g->bloom_filter_settings;
+			continue;
+		}
+
+		if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry ||
+		    g->bloom_filter_settings->num_hashes != settings->num_hashes) {
+			g->chunk_bloom_indexes = NULL;
+			g->chunk_bloom_data = NULL;
+			FREE_AND_NULL(g->bloom_filter_settings);
+
+			warning(_("disabling Bloom filters for commit-graph "
+				  "layer '%s' due to incompatible settings"),
+				oid_to_hex(&g->oid));
+		}
+	}
+}
+
 static int add_graph_to_chain(struct commit_graph *g,
 			      struct commit_graph *chain,
 			      struct object_id *oids,
@@ -666,6 +690,7 @@ struct commit_graph *load_commit_graph_chain_fd_st(struct repository *r,
 	}
 
 	validate_mixed_generation_chain(graph_chain);
+	validate_mixed_bloom_settings(graph_chain);
 
 	free(oids);
 	fclose(fp);
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index cc6ebc8140..20b0cf0c0e 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -421,8 +421,71 @@ test_expect_success 'Bloom generation backfills empty commits' '
 	)
 '
 
+graph=.git/objects/info/commit-graph
+graphdir=.git/objects/info/commit-graphs
+chain=$graphdir/commit-graph-chain
+
+test_expect_success 'setup for mixed Bloom setting tests' '
+	repo=mixed-bloom-settings &&
+
+	git init $repo &&
+	for i in one two three
+	do
+		test_commit -C $repo $i file || return 1
+	done
+'
+
+test_expect_success 'ensure incompatible Bloom filters are ignored' '
+	# Compute Bloom filters with "unusual" settings.
+	git -C $repo rev-parse one >in &&
+	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
+		--stdin-commits --changed-paths --split <in &&
+	layer=$(head -n 1 $repo/$chain) &&
+
+	# A commit-graph layer without Bloom filters "hides" the layers
+	# below ...
+	git -C $repo rev-parse two >in &&
+	git -C $repo commit-graph write --stdin-commits --no-changed-paths \
+		--split=no-merge <in &&
+
+	# Another commit-graph layer that has Bloom filters, but with
+	# standard settings, and is thus incompatible with the base
+	# layer written above.
+	git -C $repo rev-parse HEAD >in &&
+	git -C $repo commit-graph write --stdin-commits --changed-paths \
+		--split=no-merge <in &&
+
+	test_line_count = 3 $repo/$chain &&
+
+	# Ensure that incompatible Bloom filters are ignored.
+	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- file \
+		>expect 2>err &&
+	git -C $repo log --oneline --no-decorate -- file >actual 2>err &&
+	test_cmp expect actual &&
+	grep "disabling Bloom filters for commit-graph layer .$layer." err
+'
+
+test_expect_success 'merge graph layers with incompatible Bloom settings' '
+	# Ensure that incompatible Bloom filters are ignored when
+	# merging existing layers.
+	git -C $repo commit-graph write --reachable --changed-paths 2>err &&
+	grep "disabling Bloom filters for commit-graph layer .$layer." err &&
+
+	test_path_is_file $repo/$graph &&
+	test_dir_is_empty $repo/$graphdir &&
+
+	git -C $repo -c core.commitGraph=false log --oneline --no-decorate -- \
+		file >expect &&
+	trace_out="$(pwd)/trace.perf" &&
+	GIT_TRACE2_PERF="$trace_out" \
+		git -C $repo log --oneline --no-decorate -- file >actual 2>err &&
+
+	test_cmp expect actual &&
+	grep "statistics:{\"filter_not_present\":0," trace.perf &&
+	test_must_be_empty err
+'
+
 corrupt_graph () {
-	graph=.git/objects/info/commit-graph &&
 	test_when_finished "rm -rf $graph" &&
 	git commit-graph write --reachable --changed-paths &&
 	corrupt_chunk_file $graph "$@"
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 04/17] gitformat-commit-graph: describe version 2 of BDAT

[Taylor Blau]

From: Jonathan Tan <jonathantanmy@google.com>

The code change to Git to support version 2 will be done in subsequent
commits.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/gitformat-commit-graph.txt | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/Documentation/gitformat-commit-graph.txt b/Documentation/gitformat-commit-graph.txt
index 31cad585e2..3e906e8030 100644
--- a/Documentation/gitformat-commit-graph.txt
+++ b/Documentation/gitformat-commit-graph.txt
@@ -142,13 +142,16 @@ All multi-byte numbers are in network byte order.
 
 ==== Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
     * It starts with header consisting of three unsigned 32-bit integers:
-      - Version of the hash algorithm being used. We currently only support
-	value 1 which corresponds to the 32-bit version of the murmur3 hash
+      - Version of the hash algorithm being used. We currently support
+	value 2 which corresponds to the 32-bit version of the murmur3 hash
 	implemented exactly as described in
 	https://en.wikipedia.org/wiki/MurmurHash#Algorithm and the double
 	hashing technique using seed values 0x293ae76f and 0x7e646e2 as
 	described in https://doi.org/10.1007/978-3-540-30494-4_26 "Bloom Filters
-	in Probabilistic Verification"
+	in Probabilistic Verification". Version 1 Bloom filters have a bug that appears
+	when char is signed and the repository has path names that have characters >=
+	0x80; Git supports reading and writing them, but this ability will be removed
+	in a future version of Git.
       - The number of times a path is hashed and hence the number of bit positions
 	      that cumulatively determine whether a file is present in the commit.
       - The minimum number of bits 'b' per entry in the Bloom filter. If the filter
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 05/17] t/helper/test-read-graph.c: extract `dump_graph_info()`

[Taylor Blau]

Prepare for the 'read-graph' test helper to perform other tasks besides
dumping high-level information about the commit-graph by extracting its
main routine into a separate function.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/helper/test-read-graph.c | 31 ++++++++++++++++++-------------
 1 file changed, 18 insertions(+), 13 deletions(-)

diff --git a/t/helper/test-read-graph.c b/t/helper/test-read-graph.c
index 8c7a83f578..3375392f6c 100644
--- a/t/helper/test-read-graph.c
+++ b/t/helper/test-read-graph.c
@@ -5,20 +5,8 @@
 #include "bloom.h"
 #include "setup.h"
 
-int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+static void dump_graph_info(struct commit_graph *graph)
 {
-	struct commit_graph *graph = NULL;
-	struct object_directory *odb;
-
-	setup_git_directory();
-	odb = the_repository->objects->odb;
-
-	prepare_repo_settings(the_repository);
-
-	graph = read_commit_graph_one(the_repository, odb);
-	if (!graph)
-		return 1;
-
 	printf("header: %08x %d %d %d %d\n",
 		ntohl(*(uint32_t*)graph->data),
 		*(unsigned char*)(graph->data + 4),
@@ -57,6 +45,23 @@ int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
 	if (graph->topo_levels)
 		printf(" topo_levels");
 	printf("\n");
+}
+
+int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+{
+	struct commit_graph *graph = NULL;
+	struct object_directory *odb;
+
+	setup_git_directory();
+	odb = the_repository->objects->odb;
+
+	prepare_repo_settings(the_repository);
+
+	graph = read_commit_graph_one(the_repository, odb);
+	if (!graph)
+		return 1;
+
+	dump_graph_info(graph);
 
 	UNLEAK(graph);
 
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 06/17] bloom.h: make `load_bloom_filter_from_graph()` public

[Taylor Blau]

Prepare for a future commit to use the load_bloom_filter_from_graph()
function directly to load specific Bloom filters out of the commit-graph
for manual inspection (to be used during tests).

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 6 +++---
 bloom.h | 5 +++++
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index e529f7605c..401999ed3c 100644
--- a/bloom.c
+++ b/bloom.c
@@ -48,9 +48,9 @@ static int check_bloom_offset(struct commit_graph *g, uint32_t pos,
 	return -1;
 }
 
-static int load_bloom_filter_from_graph(struct commit_graph *g,
-					struct bloom_filter *filter,
-					uint32_t graph_pos)
+int load_bloom_filter_from_graph(struct commit_graph *g,
+				 struct bloom_filter *filter,
+				 uint32_t graph_pos)
 {
 	uint32_t lex_pos, start_index, end_index;
 
diff --git a/bloom.h b/bloom.h
index adde6dfe21..1e4f612d2c 100644
--- a/bloom.h
+++ b/bloom.h
@@ -3,6 +3,7 @@
 
 struct commit;
 struct repository;
+struct commit_graph;
 
 struct bloom_filter_settings {
 	/*
@@ -68,6 +69,10 @@ struct bloom_key {
 	uint32_t *hashes;
 };
 
+int load_bloom_filter_from_graph(struct commit_graph *g,
+				 struct bloom_filter *filter,
+				 uint32_t graph_pos);
+
 /*
  * Calculate the murmur3 32-bit hash value for the given data
  * using the given seed.
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 07/17] t/helper/test-read-graph: implement `bloom-filters` mode

[Taylor Blau]

Implement a mode of the "read-graph" test helper to dump out the
hexadecimal contents of the Bloom filter(s) contained in a commit-graph.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/helper/test-read-graph.c | 44 +++++++++++++++++++++++++++++++++-----
 1 file changed, 39 insertions(+), 5 deletions(-)

diff --git a/t/helper/test-read-graph.c b/t/helper/test-read-graph.c
index 3375392f6c..da9ac8584d 100644
--- a/t/helper/test-read-graph.c
+++ b/t/helper/test-read-graph.c
@@ -47,10 +47,32 @@ static void dump_graph_info(struct commit_graph *graph)
 	printf("\n");
 }
 
-int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
+static void dump_graph_bloom_filters(struct commit_graph *graph)
+{
+	uint32_t i;
+
+	for (i = 0; i < graph->num_commits + graph->num_commits_in_base; i++) {
+		struct bloom_filter filter = { 0 };
+		size_t j;
+
+		if (load_bloom_filter_from_graph(graph, &filter, i) < 0) {
+			fprintf(stderr, "missing Bloom filter for graph "
+				"position %"PRIu32"\n", i);
+			continue;
+		}
+
+		for (j = 0; j < filter.len; j++)
+			printf("%02x", filter.data[j]);
+		if (filter.len)
+			printf("\n");
+	}
+}
+
+int cmd__read_graph(int argc, const char **argv)
 {
 	struct commit_graph *graph = NULL;
 	struct object_directory *odb;
+	int ret = 0;
 
 	setup_git_directory();
 	odb = the_repository->objects->odb;
@@ -58,12 +80,24 @@ int cmd__read_graph(int argc UNUSED, const char **argv UNUSED)
 	prepare_repo_settings(the_repository);
 
 	graph = read_commit_graph_one(the_repository, odb);
-	if (!graph)
-		return 1;
+	if (!graph) {
+		ret = 1;
+		goto done;
+	}
 
-	dump_graph_info(graph);
+	if (argc <= 1)
+		dump_graph_info(graph);
+	else if (!strcmp(argv[1], "bloom-filters"))
+		dump_graph_bloom_filters(graph);
+	else {
+		fprintf(stderr, "unknown sub-command: '%s'\n", argv[1]);
+		ret = 1;
+	}
 
+done:
 	UNLEAK(graph);
 
-	return 0;
+	return ret;
 }
+
+
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 08/17] t4216: test changed path filters with high bit paths

[Taylor Blau]

Subsequent commits will teach Git another version of changed path
filter that has different behavior with paths that contain at least
one character with its high bit set, so test the existing behavior as
a baseline.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 t/t4216-log-bloom.sh | 51 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 51 insertions(+)

diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 20b0cf0c0e..484dd093cd 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -485,6 +485,57 @@ test_expect_success 'merge graph layers with incompatible Bloom settings' '
 	test_must_be_empty err
 '
 
+get_first_changed_path_filter () {
+	test-tool read-graph bloom-filters >filters.dat &&
+	head -n 1 filters.dat
+}
+
+# chosen to be the same under all Unicode normalization forms
+CENT=$(printf "\302\242")
+
+test_expect_success 'set up repo with high bit path, version 1 changed-path' '
+	git init highbit1 &&
+	test_commit -C highbit1 c1 "$CENT" &&
+	git -C highbit1 commit-graph write --reachable --changed-paths
+'
+
+test_expect_success 'setup check value of version 1 changed-path' '
+	(
+		cd highbit1 &&
+		echo "52a9" >expect &&
+		get_first_changed_path_filter >actual
+	)
+'
+
+# expect will not match actual if char is unsigned by default. Write the test
+# in this way, so that a user running this test script can still see if the two
+# files match. (It will appear as an ordinary success if they match, and a skip
+# if not.)
+if test_cmp highbit1/expect highbit1/actual
+then
+	test_set_prereq SIGNED_CHAR_BY_DEFAULT
+fi
+test_expect_success SIGNED_CHAR_BY_DEFAULT 'check value of version 1 changed-path' '
+	# Only the prereq matters for this test.
+	true
+'
+
+test_expect_success 'setup make another commit' '
+	# "git log" does not use Bloom filters for root commits - see how, in
+	# revision.c, rev_compare_tree() (the only code path that eventually calls
+	# get_bloom_filter()) is only called by try_to_simplify_commit() when the commit
+	# has one parent. Therefore, make another commit so that we perform the tests on
+	# a non-root commit.
+	test_commit -C highbit1 anotherc1 "another$CENT"
+'
+
+test_expect_success 'version 1 changed-path used when version 1 requested' '
+	(
+		cd highbit1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
 corrupt_graph () {
 	test_when_finished "rm -rf $graph" &&
 	git commit-graph write --reachable --changed-paths &&
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 09/17] repo-settings: introduce commitgraph.changedPathsVersion

[Taylor Blau]

A subsequent commit will introduce another version of the changed-path
filter in the commit graph file. In order to control which version to
write (and read), a config variable is needed.

Therefore, introduce this config variable. For forwards compatibility,
teach Git to not read commit graphs when the config variable
is set to an unsupported version. Because we teach Git this,
commitgraph.readChangedPaths is now redundant, so deprecate it and
define its behavior in terms of the config variable we introduce.

This commit does not change the behavior of writing (Git writes changed
path filters when explicitly instructed regardless of any config
variable), but a subsequent commit will restrict Git such that it will
only write when commitgraph.changedPathsVersion is a recognized value.

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/config/commitgraph.txt | 26 ++++++++++++++++++++++---
 commit-graph.c                       |  5 +++--
 oss-fuzz/fuzz-commit-graph.c         |  2 +-
 repo-settings.c                      |  6 +++++-
 repository.h                         |  2 +-
 t/t4216-log-bloom.sh                 | 29 +++++++++++++++++++++++++++-
 6 files changed, 61 insertions(+), 9 deletions(-)

diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt
index 30604e4a4c..e68cdededa 100644
--- a/Documentation/config/commitgraph.txt
+++ b/Documentation/config/commitgraph.txt
@@ -9,6 +9,26 @@ commitGraph.maxNewFilters::
 	commit-graph write` (c.f., linkgit:git-commit-graph[1]).
 
 commitGraph.readChangedPaths::
-	If true, then git will use the changed-path Bloom filters in the
-	commit-graph file (if it exists, and they are present). Defaults to
-	true. See linkgit:git-commit-graph[1] for more information.
+	Deprecated. Equivalent to commitGraph.changedPathsVersion=-1 if true, and
+	commitGraph.changedPathsVersion=0 if false. (If commitGraph.changedPathVersion
+	is also set, commitGraph.changedPathsVersion takes precedence.)
+
+commitGraph.changedPathsVersion::
+	Specifies the version of the changed-path Bloom filters that Git will read and
+	write. May be -1, 0 or 1. Note that values greater than 1 may be
+	incompatible with older versions of Git which do not yet understand
+	those versions. Use caution when operating in a mixed-version
+	environment.
++
+Defaults to -1.
++
+If -1, Git will use the version of the changed-path Bloom filters in the
+repository, defaulting to 1 if there are none.
++
+If 0, Git will not read any Bloom filters, and will write version 1 Bloom
+filters when instructed to write.
++
+If 1, Git will only read version 1 Bloom filters, and will write version 1
+Bloom filters.
++
+See linkgit:git-commit-graph[1] for more information.
diff --git a/commit-graph.c b/commit-graph.c
index 00113b0f62..91c98ebc6c 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -459,7 +459,7 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 			graph->read_generation_data = 1;
 	}
 
-	if (s->commit_graph_read_changed_paths) {
+	if (s->commit_graph_changed_paths_version) {
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   graph_read_bloom_index, graph);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
@@ -555,7 +555,8 @@ static void validate_mixed_bloom_settings(struct commit_graph *g)
 		}
 
 		if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry ||
-		    g->bloom_filter_settings->num_hashes != settings->num_hashes) {
+		    g->bloom_filter_settings->num_hashes != settings->num_hashes ||
+		    g->bloom_filter_settings->hash_version != settings->hash_version) {
 			g->chunk_bloom_indexes = NULL;
 			g->chunk_bloom_data = NULL;
 			FREE_AND_NULL(g->bloom_filter_settings);
diff --git a/oss-fuzz/fuzz-commit-graph.c b/oss-fuzz/fuzz-commit-graph.c
index 2992079dd9..325c0b991a 100644
--- a/oss-fuzz/fuzz-commit-graph.c
+++ b/oss-fuzz/fuzz-commit-graph.c
@@ -19,7 +19,7 @@ int LLVMFuzzerTestOneInput(const uint8_t *data, size_t size)
 	 * possible.
 	 */
 	the_repository->settings.commit_graph_generation_version = 2;
-	the_repository->settings.commit_graph_read_changed_paths = 1;
+	the_repository->settings.commit_graph_changed_paths_version = 1;
 	g = parse_commit_graph(&the_repository->settings, (void *)data, size);
 	repo_clear(the_repository);
 	free_commit_graph(g);
diff --git a/repo-settings.c b/repo-settings.c
index 30cd478762..c821583fe5 100644
--- a/repo-settings.c
+++ b/repo-settings.c
@@ -23,6 +23,7 @@ void prepare_repo_settings(struct repository *r)
 	int value;
 	const char *strval;
 	int manyfiles;
+	int read_changed_paths;
 
 	if (!r->gitdir)
 		BUG("Cannot add settings for uninitialized repository");
@@ -53,7 +54,10 @@ void prepare_repo_settings(struct repository *r)
 	/* Commit graph config or default, does not cascade (simple) */
 	repo_cfg_bool(r, "core.commitgraph", &r->settings.core_commit_graph, 1);
 	repo_cfg_int(r, "commitgraph.generationversion", &r->settings.commit_graph_generation_version, 2);
-	repo_cfg_bool(r, "commitgraph.readchangedpaths", &r->settings.commit_graph_read_changed_paths, 1);
+	repo_cfg_bool(r, "commitgraph.readchangedpaths", &read_changed_paths, 1);
+	repo_cfg_int(r, "commitgraph.changedpathsversion",
+		     &r->settings.commit_graph_changed_paths_version,
+		     read_changed_paths ? -1 : 0);
 	repo_cfg_bool(r, "gc.writecommitgraph", &r->settings.gc_write_commit_graph, 1);
 	repo_cfg_bool(r, "fetch.writecommitgraph", &r->settings.fetch_write_commit_graph, 0);
 
diff --git a/repository.h b/repository.h
index 5f18486f64..f71154e12c 100644
--- a/repository.h
+++ b/repository.h
@@ -29,7 +29,7 @@ struct repo_settings {
 
 	int core_commit_graph;
 	int commit_graph_generation_version;
-	int commit_graph_read_changed_paths;
+	int commit_graph_changed_paths_version;
 	int gc_write_commit_graph;
 	int fetch_write_commit_graph;
 	int command_requires_full_index;
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 484dd093cd..642b960893 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -435,7 +435,7 @@ test_expect_success 'setup for mixed Bloom setting tests' '
 	done
 '
 
-test_expect_success 'ensure incompatible Bloom filters are ignored' '
+test_expect_success 'ensure Bloom filters with incompatible settings are ignored' '
 	# Compute Bloom filters with "unusual" settings.
 	git -C $repo rev-parse one >in &&
 	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
@@ -485,6 +485,33 @@ test_expect_success 'merge graph layers with incompatible Bloom settings' '
 	test_must_be_empty err
 '
 
+test_expect_success 'ensure Bloom filter with incompatible versions are ignored' '
+	rm "$repo/$graph" &&
+
+	git -C $repo log --oneline --no-decorate -- $CENT >expect &&
+
+	# Compute v1 Bloom filters for commits at the bottom.
+	git -C $repo rev-parse HEAD^ >in &&
+	git -C $repo commit-graph write --stdin-commits --changed-paths \
+		--split <in &&
+
+	# Compute v2 Bloomfilters for the rest of the commits at the top.
+	git -C $repo rev-parse HEAD >in &&
+	git -C $repo -c commitGraph.changedPathsVersion=2 commit-graph write \
+		--stdin-commits --changed-paths --split=no-merge <in &&
+
+	test_line_count = 2 $repo/$chain &&
+
+	git -C $repo log --oneline --no-decorate -- $CENT >actual 2>err &&
+	test_cmp expect actual &&
+
+	layer="$(head -n 1 $repo/$chain)" &&
+	cat >expect.err <<-EOF &&
+	warning: disabling Bloom filters for commit-graph layer $SQ$layer$SQ due to incompatible settings
+	EOF
+	test_cmp expect.err err
+'
+
 get_first_changed_path_filter () {
 	test-tool read-graph bloom-filters >filters.dat &&
 	head -n 1 filters.dat
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 10/17] commit-graph: new Bloom filter version that fixes murmur3

[Taylor Blau]

The murmur3 implementation in bloom.c has a bug when converting series
of 4 bytes into network-order integers when char is signed (which is
controllable by a compiler option, and the default signedness of char is
platform-specific). When a string contains characters with the high bit
set, this bug causes results that, although internally consistent within
Git, does not accord with other implementations of murmur3 (thus,
the changed path filters wouldn't be readable by other off-the-shelf
implementatios of murmur3) and even with Git binaries that were compiled
with different signedness of char. This bug affects both how Git writes
changed path filters to disk and how Git interprets changed path filters
on disk.

Therefore, introduce a new version (2) of changed path filters that
corrects this problem. The existing version (1) is still supported and
is still the default, but users should migrate away from it as soon
as possible.

Because this bug only manifests with characters that have the high bit
set, it may be possible that some (or all) commits in a given repo would
have the same changed path filter both before and after this fix is
applied. However, in order to determine whether this is the case, the
changed paths would first have to be computed, at which point it is not
much more expensive to just compute a new changed path filter.

So this patch does not include any mechanism to "salvage" changed path
filters from repositories. There is also no "mixed" mode - for each
invocation of Git, reading and writing changed path filters are done
with the same version number; this version number may be explicitly
stated (typically if the user knows which version they need) or
automatically determined from the version of the existing changed path
filters in the repository.

There is a change in write_commit_graph(). graph_read_bloom_data()
makes it possible for chunk_bloom_data to be non-NULL but
bloom_filter_settings to be NULL, which causes a segfault later on. I
produced such a segfault while developing this patch, but couldn't find
a way to reproduce it neither after this complete patch (or before),
but in any case it seemed like a good thing to include that might help
future patch authors.

The value in t0095 was obtained from another murmur3 implementation
using the following Go source code:

  package main

  import "fmt"
  import "github.com/spaolacci/murmur3"

  func main() {
          fmt.Printf("%x\n", murmur3.Sum32([]byte("Hello world!")))
          fmt.Printf("%x\n", murmur3.Sum32([]byte{0x99, 0xaa, 0xbb, 0xcc, 0xdd, 0xee, 0xff}))
  }

Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 Documentation/config/commitgraph.txt |   5 +-
 bloom.c                              |  69 +++++++++++++++-
 bloom.h                              |   8 +-
 commit-graph.c                       |  37 +++++++--
 t/helper/test-bloom.c                |   9 ++-
 t/t0095-bloom.sh                     |   8 ++
 t/t4216-log-bloom.sh                 | 114 +++++++++++++++++++++++++++
 7 files changed, 234 insertions(+), 16 deletions(-)

diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt
index e68cdededa..7f8c9d6638 100644
--- a/Documentation/config/commitgraph.txt
+++ b/Documentation/config/commitgraph.txt
@@ -15,7 +15,7 @@ commitGraph.readChangedPaths::
 
 commitGraph.changedPathsVersion::
 	Specifies the version of the changed-path Bloom filters that Git will read and
-	write. May be -1, 0 or 1. Note that values greater than 1 may be
+	write. May be -1, 0, 1, or 2. Note that values greater than 1 may be
 	incompatible with older versions of Git which do not yet understand
 	those versions. Use caution when operating in a mixed-version
 	environment.
@@ -31,4 +31,7 @@ filters when instructed to write.
 If 1, Git will only read version 1 Bloom filters, and will write version 1
 Bloom filters.
 +
+If 2, Git will only read version 2 Bloom filters, and will write version 2
+Bloom filters.
++
 See linkgit:git-commit-graph[1] for more information.
diff --git a/bloom.c b/bloom.c
index 401999ed3c..e9361b1c1f 100644
--- a/bloom.c
+++ b/bloom.c
@@ -99,7 +99,64 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
  * Not considered to be cryptographically secure.
  * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
  */
-uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len)
+uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len)
+{
+	const uint32_t c1 = 0xcc9e2d51;
+	const uint32_t c2 = 0x1b873593;
+	const uint32_t r1 = 15;
+	const uint32_t r2 = 13;
+	const uint32_t m = 5;
+	const uint32_t n = 0xe6546b64;
+	int i;
+	uint32_t k1 = 0;
+	const char *tail;
+
+	int len4 = len / sizeof(uint32_t);
+
+	uint32_t k;
+	for (i = 0; i < len4; i++) {
+		uint32_t byte1 = (uint32_t)(unsigned char)data[4*i];
+		uint32_t byte2 = ((uint32_t)(unsigned char)data[4*i + 1]) << 8;
+		uint32_t byte3 = ((uint32_t)(unsigned char)data[4*i + 2]) << 16;
+		uint32_t byte4 = ((uint32_t)(unsigned char)data[4*i + 3]) << 24;
+		k = byte1 | byte2 | byte3 | byte4;
+		k *= c1;
+		k = rotate_left(k, r1);
+		k *= c2;
+
+		seed ^= k;
+		seed = rotate_left(seed, r2) * m + n;
+	}
+
+	tail = (data + len4 * sizeof(uint32_t));
+
+	switch (len & (sizeof(uint32_t) - 1)) {
+	case 3:
+		k1 ^= ((uint32_t)(unsigned char)tail[2]) << 16;
+		/*-fallthrough*/
+	case 2:
+		k1 ^= ((uint32_t)(unsigned char)tail[1]) << 8;
+		/*-fallthrough*/
+	case 1:
+		k1 ^= ((uint32_t)(unsigned char)tail[0]) << 0;
+		k1 *= c1;
+		k1 = rotate_left(k1, r1);
+		k1 *= c2;
+		seed ^= k1;
+		break;
+	}
+
+	seed ^= (uint32_t)len;
+	seed ^= (seed >> 16);
+	seed *= 0x85ebca6b;
+	seed ^= (seed >> 13);
+	seed *= 0xc2b2ae35;
+	seed ^= (seed >> 16);
+
+	return seed;
+}
+
+static uint32_t murmur3_seeded_v1(uint32_t seed, const char *data, size_t len)
 {
 	const uint32_t c1 = 0xcc9e2d51;
 	const uint32_t c2 = 0x1b873593;
@@ -164,8 +221,14 @@ void fill_bloom_key(const char *data,
 	int i;
 	const uint32_t seed0 = 0x293ae76f;
 	const uint32_t seed1 = 0x7e646e2c;
-	const uint32_t hash0 = murmur3_seeded(seed0, data, len);
-	const uint32_t hash1 = murmur3_seeded(seed1, data, len);
+	uint32_t hash0, hash1;
+	if (settings->hash_version == 2) {
+		hash0 = murmur3_seeded_v2(seed0, data, len);
+		hash1 = murmur3_seeded_v2(seed1, data, len);
+	} else {
+		hash0 = murmur3_seeded_v1(seed0, data, len);
+		hash1 = murmur3_seeded_v1(seed1, data, len);
+	}
 
 	key->hashes = (uint32_t *)xcalloc(settings->num_hashes, sizeof(uint32_t));
 	for (i = 0; i < settings->num_hashes; i++)
diff --git a/bloom.h b/bloom.h
index 1e4f612d2c..138d57a86b 100644
--- a/bloom.h
+++ b/bloom.h
@@ -8,9 +8,11 @@ struct commit_graph;
 struct bloom_filter_settings {
 	/*
 	 * The version of the hashing technique being used.
-	 * We currently only support version = 1 which is
+	 * The newest version is 2, which is
 	 * the seeded murmur3 hashing technique implemented
-	 * in bloom.c.
+	 * in bloom.c. Bloom filters of version 1 were created
+	 * with prior versions of Git, which had a bug in the
+	 * implementation of the hash function.
 	 */
 	uint32_t hash_version;
 
@@ -80,7 +82,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
  * Not considered to be cryptographically secure.
  * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
  */
-uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len);
+uint32_t murmur3_seeded_v2(uint32_t seed, const char *data, size_t len);
 
 void fill_bloom_key(const char *data,
 		    size_t len,
diff --git a/commit-graph.c b/commit-graph.c
index 91c98ebc6c..22237e7dfc 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -340,10 +340,16 @@ static int graph_read_bloom_index(const unsigned char *chunk_start,
 	return 0;
 }
 
+struct graph_read_bloom_data_context {
+	struct commit_graph *g;
+	int *commit_graph_changed_paths_version;
+};
+
 static int graph_read_bloom_data(const unsigned char *chunk_start,
 				  size_t chunk_size, void *data)
 {
-	struct commit_graph *g = data;
+	struct graph_read_bloom_data_context *c = data;
+	struct commit_graph *g = c->g;
 	uint32_t hash_version;
 
 	if (chunk_size < BLOOMDATA_CHUNK_HEADER_SIZE) {
@@ -354,13 +360,15 @@ static int graph_read_bloom_data(const unsigned char *chunk_start,
 		return -1;
 	}
 
+	hash_version = get_be32(chunk_start);
+
+	if (*c->commit_graph_changed_paths_version == -1)
+		*c->commit_graph_changed_paths_version = hash_version;
+	else if (hash_version != *c->commit_graph_changed_paths_version)
+		return 0;
+
 	g->chunk_bloom_data = chunk_start;
 	g->chunk_bloom_data_size = chunk_size;
-	hash_version = get_be32(chunk_start);
-
-	if (hash_version != 1)
-		return 0;
-
 	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
 	g->bloom_filter_settings->hash_version = hash_version;
 	g->bloom_filter_settings->num_hashes = get_be32(chunk_start + 4);
@@ -460,10 +468,14 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 	}
 
 	if (s->commit_graph_changed_paths_version) {
+		struct graph_read_bloom_data_context context = {
+			.g = graph,
+			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
+		};
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   graph_read_bloom_index, graph);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
-			   graph_read_bloom_data, graph);
+			   graph_read_bloom_data, &context);
 	}
 
 	if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
@@ -2501,6 +2513,13 @@ int write_commit_graph(struct object_directory *odb,
 	}
 	if (!commit_graph_compatible(r))
 		return 0;
+	if (r->settings.commit_graph_changed_paths_version < -1
+	    || r->settings.commit_graph_changed_paths_version > 2) {
+		warning(_("attempting to write a commit-graph, but "
+			  "'commitgraph.changedPathsVersion' (%d) is not supported"),
+			r->settings.commit_graph_changed_paths_version);
+		return 0;
+	}
 
 	CALLOC_ARRAY(ctx, 1);
 	ctx->r = r;
@@ -2513,6 +2532,8 @@ int write_commit_graph(struct object_directory *odb,
 	ctx->write_generation_data = (get_configured_generation_version(r) == 2);
 	ctx->num_generation_data_overflows = 0;
 
+	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version == 2
+		? 2 : 1;
 	bloom_settings.bits_per_entry = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY",
 						      bloom_settings.bits_per_entry);
 	bloom_settings.num_hashes = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_NUM_HASHES",
@@ -2542,7 +2563,7 @@ int write_commit_graph(struct object_directory *odb,
 		g = ctx->r->objects->commit_graph;
 
 		/* We have changed-paths already. Keep them in the next graph */
-		if (g && g->chunk_bloom_data) {
+		if (g && g->bloom_filter_settings) {
 			ctx->changed_paths = 1;
 			ctx->bloom_settings = g->bloom_filter_settings;
 		}
diff --git a/t/helper/test-bloom.c b/t/helper/test-bloom.c
index 1281e66876..eefc1668c7 100644
--- a/t/helper/test-bloom.c
+++ b/t/helper/test-bloom.c
@@ -49,6 +49,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid)
 
 static const char *bloom_usage = "\n"
 "  test-tool bloom get_murmur3 <string>\n"
+"  test-tool bloom get_murmur3_seven_highbit\n"
 "  test-tool bloom generate_filter <string> [<string>...]\n"
 "  test-tool bloom get_filter_for_commit <commit-hex>\n";
 
@@ -63,7 +64,13 @@ int cmd__bloom(int argc, const char **argv)
 		uint32_t hashed;
 		if (argc < 3)
 			usage(bloom_usage);
-		hashed = murmur3_seeded(0, argv[2], strlen(argv[2]));
+		hashed = murmur3_seeded_v2(0, argv[2], strlen(argv[2]));
+		printf("Murmur3 Hash with seed=0:0x%08x\n", hashed);
+	}
+
+	if (!strcmp(argv[1], "get_murmur3_seven_highbit")) {
+		uint32_t hashed;
+		hashed = murmur3_seeded_v2(0, "\x99\xaa\xbb\xcc\xdd\xee\xff", 7);
 		printf("Murmur3 Hash with seed=0:0x%08x\n", hashed);
 	}
 
diff --git a/t/t0095-bloom.sh b/t/t0095-bloom.sh
index b567383eb8..c8d84ab606 100755
--- a/t/t0095-bloom.sh
+++ b/t/t0095-bloom.sh
@@ -29,6 +29,14 @@ test_expect_success 'compute unseeded murmur3 hash for test string 2' '
 	test_cmp expect actual
 '
 
+test_expect_success 'compute unseeded murmur3 hash for test string 3' '
+	cat >expect <<-\EOF &&
+	Murmur3 Hash with seed=0:0xa183ccfd
+	EOF
+	test-tool bloom get_murmur3_seven_highbit >actual &&
+	test_cmp expect actual
+'
+
 test_expect_success 'compute bloom key for empty string' '
 	cat >expect <<-\EOF &&
 	Hashes:0x5615800c|0x5b966560|0x61174ab4|0x66983008|0x6c19155c|0x7199fab0|0x771ae004|
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index 642b960893..a7bf3a7dca 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -563,6 +563,120 @@ test_expect_success 'version 1 changed-path used when version 1 requested' '
 	)
 '
 
+test_expect_success 'version 1 changed-path not used when version 2 requested' '
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion 2 &&
+		test_bloom_filters_not_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 1 changed-path used when autodetect requested' '
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'when writing another commit graph, preserve existing version 1 of changed-path' '
+	test_commit -C highbit1 c1double "$CENT$CENT" &&
+	git -C highbit1 commit-graph write --reachable --changed-paths &&
+	(
+		cd highbit1 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		echo "options: bloom(1,10,7) read_generation_data" >expect &&
+		test-tool read-graph >full &&
+		grep options full >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'set up repo with high bit path, version 2 changed-path' '
+	git init highbit2 &&
+	git -C highbit2 config --add commitgraph.changedPathsVersion 2 &&
+	test_commit -C highbit2 c2 "$CENT" &&
+	git -C highbit2 commit-graph write --reachable --changed-paths
+'
+
+test_expect_success 'check value of version 2 changed-path' '
+	(
+		cd highbit2 &&
+		echo "c01f" >expect &&
+		get_first_changed_path_filter >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'setup make another commit' '
+	# "git log" does not use Bloom filters for root commits - see how, in
+	# revision.c, rev_compare_tree() (the only code path that eventually calls
+	# get_bloom_filter()) is only called by try_to_simplify_commit() when the commit
+	# has one parent. Therefore, make another commit so that we perform the tests on
+	# a non-root commit.
+	test_commit -C highbit2 anotherc2 "another$CENT"
+'
+
+test_expect_success 'version 2 changed-path used when version 2 requested' '
+	(
+		cd highbit2 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 2 changed-path not used when version 1 requested' '
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion 1 &&
+		test_bloom_filters_not_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'version 2 changed-path used when autodetect requested' '
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		test_bloom_filters_used "-- another$CENT"
+	)
+'
+
+test_expect_success 'when writing another commit graph, preserve existing version 2 of changed-path' '
+	test_commit -C highbit2 c2double "$CENT$CENT" &&
+	git -C highbit2 commit-graph write --reachable --changed-paths &&
+	(
+		cd highbit2 &&
+		git config --add commitgraph.changedPathsVersion -1 &&
+		echo "options: bloom(2,10,7) read_generation_data" >expect &&
+		test-tool read-graph >full &&
+		grep options full >actual &&
+		test_cmp expect actual
+	)
+'
+
+test_expect_success 'when writing commit graph, do not reuse changed-path of another version' '
+	git init doublewrite &&
+	test_commit -C doublewrite c "$CENT" &&
+	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
+	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	for v in -2 3
+	do
+		git -C doublewrite config --add commitgraph.changedPathsVersion $v &&
+		git -C doublewrite commit-graph write --reachable --changed-paths 2>err &&
+		cat >expect <<-EOF &&
+		warning: attempting to write a commit-graph, but ${SQ}commitgraph.changedPathsVersion${SQ} ($v) is not supported
+		EOF
+		test_cmp expect err || return 1
+	done &&
+	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
+	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	(
+		cd doublewrite &&
+		echo "c01f" >expect &&
+		get_first_changed_path_filter >actual &&
+		test_cmp expect actual
+	)
+'
+
 corrupt_graph () {
 	test_when_finished "rm -rf $graph" &&
 	git commit-graph write --reachable --changed-paths &&
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 11/17] bloom: annotate filters with hash version

[Taylor Blau]

In subsequent commits, we will want to load existing Bloom filters out
of a commit-graph, even when the hash version they were computed with
does not match the value of `commitGraph.changedPathVersion`.

In order to differentiate between the two, add a "version" field to each
Bloom filter.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 11 ++++++++---
 bloom.h |  1 +
 2 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index e9361b1c1f..9284b88e95 100644
--- a/bloom.c
+++ b/bloom.c
@@ -88,6 +88,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
 	filter->data = (unsigned char *)(g->chunk_bloom_data +
 					sizeof(unsigned char) * start_index +
 					BLOOMDATA_CHUNK_HEADER_SIZE);
+	filter->version = g->bloom_filter_settings->hash_version;
 
 	return 1;
 }
@@ -273,11 +274,13 @@ static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 	return strcmp(e1->path, e2->path);
 }
 
-static void init_truncated_large_filter(struct bloom_filter *filter)
+static void init_truncated_large_filter(struct bloom_filter *filter,
+					int version)
 {
 	filter->data = xmalloc(1);
 	filter->data[0] = 0xFF;
 	filter->len = 1;
+	filter->version = version;
 }
 
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
@@ -362,13 +365,15 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 		}
 
 		if (hashmap_get_size(&pathmap) > settings->max_changed_paths) {
-			init_truncated_large_filter(filter);
+			init_truncated_large_filter(filter,
+						    settings->hash_version);
 			if (computed)
 				*computed |= BLOOM_TRUNC_LARGE;
 			goto cleanup;
 		}
 
 		filter->len = (hashmap_get_size(&pathmap) * settings->bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
+		filter->version = settings->hash_version;
 		if (!filter->len) {
 			if (computed)
 				*computed |= BLOOM_TRUNC_EMPTY;
@@ -388,7 +393,7 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 	} else {
 		for (i = 0; i < diff_queued_diff.nr; i++)
 			diff_free_filepair(diff_queued_diff.queue[i]);
-		init_truncated_large_filter(filter);
+		init_truncated_large_filter(filter, settings->hash_version);
 
 		if (computed)
 			*computed |= BLOOM_TRUNC_LARGE;
diff --git a/bloom.h b/bloom.h
index 138d57a86b..330a140520 100644
--- a/bloom.h
+++ b/bloom.h
@@ -55,6 +55,7 @@ struct bloom_filter_settings {
 struct bloom_filter {
 	unsigned char *data;
 	size_t len;
+	int version;
 };
 
 /*
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 12/17] bloom: prepare to discard incompatible Bloom filters

[Taylor Blau]

Callers use the inline `get_bloom_filter()` implementation as a thin
wrapper around `get_or_compute_bloom_filter()`. The former calls the
latter with a value of "0" for `compute_if_not_present`, making
`get_bloom_filter()` the default read-only path for fetching an existing
Bloom filter.

Callers expect the value returned from `get_bloom_filter()` is usable,
that is that it's compatible with the configured value corresponding to
`commitGraph.changedPathsVersion`.

This is OK, since the commit-graph machinery only initializes its BDAT
chunk (thereby enabling it to service Bloom filter queries) when the
Bloom filter hash_version is compatible with our settings. So any value
returned by `get_bloom_filter()` is trivially useable.

However, subsequent commits will load the BDAT chunk even when the Bloom
filters are built with incompatible hash versions. Prepare to handle
this by teaching `get_bloom_filter()` to discard filters that are
incompatible with the configured hash version.

Callers who wish to read incompatible filters (e.g., for upgrading
filters from v1 to v2) may use the lower level routine,
`get_or_compute_bloom_filter()`.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c | 20 +++++++++++++++++++-
 bloom.h | 20 ++++++++++++++++++--
 2 files changed, 37 insertions(+), 3 deletions(-)

diff --git a/bloom.c b/bloom.c
index 9284b88e95..323d8012b8 100644
--- a/bloom.c
+++ b/bloom.c
@@ -283,6 +283,23 @@ static void init_truncated_large_filter(struct bloom_filter *filter,
 	filter->version = version;
 }
 
+struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c)
+{
+	struct bloom_filter *filter;
+	int hash_version;
+
+	filter = get_or_compute_bloom_filter(r, c, 0, NULL, NULL);
+	if (!filter)
+		return NULL;
+
+	prepare_repo_settings(r);
+	hash_version = r->settings.commit_graph_changed_paths_version;
+
+	if (!(hash_version == -1 || hash_version == filter->version))
+		return NULL; /* unusable filter */
+	return filter;
+}
+
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						 struct commit *c,
 						 int compute_if_not_present,
@@ -308,7 +325,8 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						     filter, graph_pos);
 	}
 
-	if (filter->data && filter->len)
+	if ((filter->data && filter->len) &&
+	    (!settings || settings->hash_version == filter->version))
 		return filter;
 	if (!compute_if_not_present)
 		return NULL;
diff --git a/bloom.h b/bloom.h
index 330a140520..bfe389e29c 100644
--- a/bloom.h
+++ b/bloom.h
@@ -110,8 +110,24 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						 const struct bloom_filter_settings *settings,
 						 enum bloom_filter_computed *computed);
 
-#define get_bloom_filter(r, c) get_or_compute_bloom_filter( \
-	(r), (c), 0, NULL, NULL)
+/*
+ * Find the Bloom filter associated with the given commit "c".
+ *
+ * If any of the following are true
+ *
+ *   - the repository does not have a commit-graph, or
+ *   - the repository disables reading from the commit-graph, or
+ *   - the given commit does not have a Bloom filter computed, or
+ *   - there is a Bloom filter for commit "c", but it cannot be read
+ *     because the filter uses an incompatible version of murmur3
+ *
+ * , then `get_bloom_filter()` will return NULL. Otherwise, the corresponding
+ * Bloom filter will be returned.
+ *
+ * For callers who wish to inspect Bloom filters with incompatible hash
+ * versions, use get_or_compute_bloom_filter().
+ */
+struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c);
 
 int bloom_filter_contains(const struct bloom_filter *filter,
 			  const struct bloom_key *key,
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 13/17] commit-graph.c: unconditionally load Bloom filters

[Taylor Blau]

In an earlier commit, we began ignoring the Bloom data ("BDAT") chunk
for commit-graphs whose Bloom filters were computed using a hash version
  incompatible with the value of `commitGraph.changedPathVersion`.

Now that the Bloom API has been hardened to discard these incompatible
filters (with the exception of low-level APIs), we can safely load these
Bloom filters unconditionally.

We no longer want to return early from `graph_read_bloom_data()`, and
similarly do not want to set the bloom_settings' `hash_version` field as
a side-effect. The latter is because we want to wait until we know which
Bloom settings we're using (either the defaults, from the GIT_TEST
variables, or from the previous commit-graph layer) before deciding what
hash_version to use.

If we detect an existing BDAT chunk, we'll infer the rest of the
settings (e.g., number of hashes, bits per entry, and maximum number of
changed paths) from the earlier graph layer. The hash_version will be
inferred from the previous layer as well, unless one has already been
specified via configuration.

Once all of that is done, we normalize the value of the hash_version to
either "1" or "2".

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/commit-graph.c b/commit-graph.c
index 22237e7dfc..a2063d5f91 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -362,11 +362,6 @@ static int graph_read_bloom_data(const unsigned char *chunk_start,
 
 	hash_version = get_be32(chunk_start);
 
-	if (*c->commit_graph_changed_paths_version == -1)
-		*c->commit_graph_changed_paths_version = hash_version;
-	else if (hash_version != *c->commit_graph_changed_paths_version)
-		return 0;
-
 	g->chunk_bloom_data = chunk_start;
 	g->chunk_bloom_data_size = chunk_size;
 	g->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
@@ -2532,8 +2527,7 @@ int write_commit_graph(struct object_directory *odb,
 	ctx->write_generation_data = (get_configured_generation_version(r) == 2);
 	ctx->num_generation_data_overflows = 0;
 
-	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version == 2
-		? 2 : 1;
+	bloom_settings.hash_version = r->settings.commit_graph_changed_paths_version;
 	bloom_settings.bits_per_entry = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_BITS_PER_ENTRY",
 						      bloom_settings.bits_per_entry);
 	bloom_settings.num_hashes = git_env_ulong("GIT_TEST_BLOOM_SETTINGS_NUM_HASHES",
@@ -2565,10 +2559,18 @@ int write_commit_graph(struct object_directory *odb,
 		/* We have changed-paths already. Keep them in the next graph */
 		if (g && g->bloom_filter_settings) {
 			ctx->changed_paths = 1;
-			ctx->bloom_settings = g->bloom_filter_settings;
+
+			/* don't propagate the hash_version unless unspecified */
+			if (bloom_settings.hash_version == -1)
+				bloom_settings.hash_version = g->bloom_filter_settings->hash_version;
+			bloom_settings.bits_per_entry = g->bloom_filter_settings->bits_per_entry;
+			bloom_settings.num_hashes = g->bloom_filter_settings->num_hashes;
+			bloom_settings.max_changed_paths = g->bloom_filter_settings->max_changed_paths;
 		}
 	}
 
+	bloom_settings.hash_version = bloom_settings.hash_version == 2 ? 2 : 1;
+
 	if (ctx->split) {
 		struct commit_graph *g = ctx->r->objects->commit_graph;
 
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 14/17] commit-graph: drop unnecessary `graph_read_bloom_data_context`

[Taylor Blau]

The `graph_read_bloom_data_context` struct was introduced in an earlier
commit in order to pass pointers to the commit-graph and changed-path
Bloom filter version when reading the BDAT chunk.

The previous commit no longer writes through the changed_paths_version
pointer, making the surrounding context structure unnecessary. Drop it
and pass a pointer to the commit-graph directly when reading the BDAT
chunk.

Noticed-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 commit-graph.c | 14 ++------------
 1 file changed, 2 insertions(+), 12 deletions(-)

diff --git a/commit-graph.c b/commit-graph.c
index a2063d5f91..a02556716d 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -340,16 +340,10 @@ static int graph_read_bloom_index(const unsigned char *chunk_start,
 	return 0;
 }
 
-struct graph_read_bloom_data_context {
-	struct commit_graph *g;
-	int *commit_graph_changed_paths_version;
-};
-
 static int graph_read_bloom_data(const unsigned char *chunk_start,
 				  size_t chunk_size, void *data)
 {
-	struct graph_read_bloom_data_context *c = data;
-	struct commit_graph *g = c->g;
+	struct commit_graph *g = data;
 	uint32_t hash_version;
 
 	if (chunk_size < BLOOMDATA_CHUNK_HEADER_SIZE) {
@@ -463,14 +457,10 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
 	}
 
 	if (s->commit_graph_changed_paths_version) {
-		struct graph_read_bloom_data_context context = {
-			.g = graph,
-			.commit_graph_changed_paths_version = &s->commit_graph_changed_paths_version
-		};
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
 			   graph_read_bloom_index, graph);
 		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
-			   graph_read_bloom_data, &context);
+			   graph_read_bloom_data, graph);
 	}
 
 	if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 15/17] object.h: fix mis-aligned flag bits table

[Taylor Blau]

Bit position 23 is one column too far to the left.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 object.h | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/object.h b/object.h
index 114d45954d..db25714b4e 100644
--- a/object.h
+++ b/object.h
@@ -62,7 +62,7 @@ void object_array_init(struct object_array *array);
 
 /*
  * object flag allocation:
- * revision.h:               0---------10         15             23------27
+ * revision.h:               0---------10         15               23------27
  * fetch-pack.c:             01    67
  * negotiator/default.c:       2--5
  * walker.c:                 0-2
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 16/17] commit-graph: reuse existing Bloom filters where possible

[Taylor Blau]

In an earlier commit, a bug was described where it's possible for Git to
produce non-murmur3 hashes when the platform's "char" type is signed,
and there are paths with characters whose highest bit is set (i.e. all
characters >= 0x80).

That patch allows the caller to control which version of Bloom filters
are read and written. However, even on platforms with a signed "char"
type, it is possible to reuse existing Bloom filters if and only if
there are no changed paths in any commit's first parent tree-diff whose
characters have their highest bit set.

When this is the case, we can reuse the existing filter without having
to compute a new one. This is done by marking trees which are known to
have (or not have) any such paths. When a commit's root tree is verified
to not have any such paths, we mark it as such and declare that the
commit's Bloom filter is reusable.

Note that this heuristic only goes in one direction. If neither a commit
nor its first parent have any paths in their trees with non-ASCII
characters, then we know for certain that a path with non-ASCII
characters will not appear in a tree-diff against that commit's first
parent. The reverse isn't necessarily true: just because the tree-diff
doesn't contain any such paths does not imply that no such paths exist
in either tree.

So we end up recomputing some Bloom filters that we don't strictly have
to (i.e. their bits are the same no matter which version of murmur3 we
use). But culling these out is impossible, since we'd have to perform
the full tree-diff, which is the same effort as computing the Bloom
filter from scratch.

But because we can cache our results in each tree's flag bits, we can
often avoid recomputing many filters, thereby reducing the time it takes
to run

    $ git commit-graph write --changed-paths --reachable

when upgrading from v1 to v2 Bloom filters.

To benchmark this, let's generate a commit-graph in linux.git with v1
changed-paths in generation order[^1]:

    $ git clone git@github.com:torvalds/linux.git
    $ cd linux
    $ git commit-graph write --reachable --changed-paths
    $ graph=".git/objects/info/commit-graph"
    $ mv $graph{,.bak}

Then let's time how long it takes to go from v1 to v2 filters (with and
without the upgrade path enabled), resetting the state of the
commit-graph each time:

    $ git config commitGraph.changedPathsVersion 2
    $ hyperfine -p 'cp -f $graph.bak $graph' -L v 0,1 \
        'GIT_TEST_UPGRADE_BLOOM_FILTERS={v} git.compile commit-graph write --reachable --changed-paths'

On linux.git (where there aren't any non-ASCII paths), the timings
indicate that this patch represents a speed-up over recomputing all
Bloom filters from scratch:

    Benchmark 1: GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths
      Time (mean ± σ):     124.873 s ±  0.316 s    [User: 124.081 s, System: 0.643 s]
      Range (min … max):   124.621 s … 125.227 s    3 runs

    Benchmark 2: GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths
      Time (mean ± σ):     79.271 s ±  0.163 s    [User: 74.611 s, System: 4.521 s]
      Range (min … max):   79.112 s … 79.437 s    3 runs

    Summary
      'GIT_TEST_UPGRADE_BLOOM_FILTERS=1 git.compile commit-graph write --reachable --changed-paths' ran
        1.58 ± 0.01 times faster than 'GIT_TEST_UPGRADE_BLOOM_FILTERS=0 git.compile commit-graph write --reachable --changed-paths'

On git.git, we do have some non-ASCII paths, giving us a more modest
improvement from 4.163 seconds to 3.348 seconds, for a 1.24x speed-up.
On my machine, the stats for git.git are:

  - 8,285 Bloom filters computed from scratch
  - 10 Bloom filters generated as empty
  - 4 Bloom filters generated as truncated due to too many changed paths
  - 65,114 Bloom filters were reused when transitioning from v1 to v2.

[^1]: Note that this is is important, since `--stdin-packs` or
  `--stdin-commits` orders commits in the commit-graph by their pack
  position (with `--stdin-packs`) or in the raw input (with
  `--stdin-commits`).

  Since we compute Bloom filters in the same order that commits appear
  in the graph, we must see a commit's (first) parent before we process
  the commit itself. This is only guaranteed to happen when sorting
  commits by their generation number.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c              | 90 ++++++++++++++++++++++++++++++++++++++++++--
 bloom.h              |  1 +
 commit-graph.c       |  5 +++
 object.h             |  1 +
 t/t4216-log-bloom.sh | 35 ++++++++++++++++-
 5 files changed, 128 insertions(+), 4 deletions(-)

diff --git a/bloom.c b/bloom.c
index 323d8012b8..a1c616bc71 100644
--- a/bloom.c
+++ b/bloom.c
@@ -6,6 +6,9 @@
 #include "commit-graph.h"
 #include "commit.h"
 #include "commit-slab.h"
+#include "tree.h"
+#include "tree-walk.h"
+#include "config.h"
 
 define_commit_slab(bloom_filter_slab, struct bloom_filter);
 
@@ -283,6 +286,73 @@ static void init_truncated_large_filter(struct bloom_filter *filter,
 	filter->version = version;
 }
 
+#define VISITED   (1u<<21)
+#define HIGH_BITS (1u<<22)
+
+static int has_entries_with_high_bit(struct repository *r, struct tree *t)
+{
+	if (parse_tree(t))
+		return 1;
+
+	if (!(t->object.flags & VISITED)) {
+		struct tree_desc desc;
+		struct name_entry entry;
+
+		init_tree_desc(&desc, t->buffer, t->size);
+		while (tree_entry(&desc, &entry)) {
+			size_t i;
+			for (i = 0; i < entry.pathlen; i++) {
+				if (entry.path[i] & 0x80) {
+					t->object.flags |= HIGH_BITS;
+					goto done;
+				}
+			}
+
+			if (S_ISDIR(entry.mode)) {
+				struct tree *sub = lookup_tree(r, &entry.oid);
+				if (sub && has_entries_with_high_bit(r, sub)) {
+					t->object.flags |= HIGH_BITS;
+					goto done;
+				}
+			}
+
+		}
+
+done:
+		t->object.flags |= VISITED;
+	}
+
+	return !!(t->object.flags & HIGH_BITS);
+}
+
+static int commit_tree_has_high_bit_paths(struct repository *r,
+					  struct commit *c)
+{
+	struct tree *t;
+	if (repo_parse_commit(r, c))
+		return 1;
+	t = repo_get_commit_tree(r, c);
+	if (!t)
+		return 1;
+	return has_entries_with_high_bit(r, t);
+}
+
+static struct bloom_filter *upgrade_filter(struct repository *r, struct commit *c,
+					   struct bloom_filter *filter,
+					   int hash_version)
+{
+	struct commit_list *p = c->parents;
+	if (commit_tree_has_high_bit_paths(r, c))
+		return NULL;
+
+	if (p && commit_tree_has_high_bit_paths(r, p->item))
+		return NULL;
+
+	filter->version = hash_version;
+
+	return filter;
+}
+
 struct bloom_filter *get_bloom_filter(struct repository *r, struct commit *c)
 {
 	struct bloom_filter *filter;
@@ -325,9 +395,23 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 						     filter, graph_pos);
 	}
 
-	if ((filter->data && filter->len) &&
-	    (!settings || settings->hash_version == filter->version))
-		return filter;
+	if (filter->data && filter->len) {
+		struct bloom_filter *upgrade;
+		if (!settings || settings->hash_version == filter->version)
+			return filter;
+
+		/* version mismatch, see if we can upgrade */
+		if (compute_if_not_present &&
+		    git_env_bool("GIT_TEST_UPGRADE_BLOOM_FILTERS", 1)) {
+			upgrade = upgrade_filter(r, c, filter,
+						 settings->hash_version);
+			if (upgrade) {
+				if (computed)
+					*computed |= BLOOM_UPGRADED;
+				return upgrade;
+			}
+		}
+	}
 	if (!compute_if_not_present)
 		return NULL;
 
diff --git a/bloom.h b/bloom.h
index bfe389e29c..e3a9b68905 100644
--- a/bloom.h
+++ b/bloom.h
@@ -102,6 +102,7 @@ enum bloom_filter_computed {
 	BLOOM_COMPUTED     = (1 << 1),
 	BLOOM_TRUNC_LARGE  = (1 << 2),
 	BLOOM_TRUNC_EMPTY  = (1 << 3),
+	BLOOM_UPGRADED     = (1 << 4),
 };
 
 struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
diff --git a/commit-graph.c b/commit-graph.c
index a02556716d..b285e32043 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -1167,6 +1167,7 @@ struct write_commit_graph_context {
 	int count_bloom_filter_not_computed;
 	int count_bloom_filter_trunc_empty;
 	int count_bloom_filter_trunc_large;
+	int count_bloom_filter_upgraded;
 };
 
 static int write_graph_chunk_fanout(struct hashfile *f,
@@ -1774,6 +1775,8 @@ static void trace2_bloom_filter_write_statistics(struct write_commit_graph_conte
 			   ctx->count_bloom_filter_trunc_empty);
 	trace2_data_intmax("commit-graph", ctx->r, "filter-trunc-large",
 			   ctx->count_bloom_filter_trunc_large);
+	trace2_data_intmax("commit-graph", ctx->r, "filter-upgraded",
+			   ctx->count_bloom_filter_upgraded);
 }
 
 static void compute_bloom_filters(struct write_commit_graph_context *ctx)
@@ -1815,6 +1818,8 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)
 				ctx->count_bloom_filter_trunc_empty++;
 			if (computed & BLOOM_TRUNC_LARGE)
 				ctx->count_bloom_filter_trunc_large++;
+		} else if (computed & BLOOM_UPGRADED) {
+			ctx->count_bloom_filter_upgraded++;
 		} else if (computed & BLOOM_NOT_COMPUTED)
 			ctx->count_bloom_filter_not_computed++;
 		ctx->total_bloom_filter_data_size += filter
diff --git a/object.h b/object.h
index db25714b4e..2e5e08725f 100644
--- a/object.h
+++ b/object.h
@@ -75,6 +75,7 @@ void object_array_init(struct object_array *array);
  * commit-reach.c:                                  16-----19
  * sha1-name.c:                                              20
  * list-objects-filter.c:                                      21
+ * bloom.c:                                                    2122
  * builtin/fsck.c:           0--3
  * builtin/gc.c:             0
  * builtin/index-pack.c:                                     2021
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
index a7bf3a7dca..823d1cf773 100755
--- a/t/t4216-log-bloom.sh
+++ b/t/t4216-log-bloom.sh
@@ -222,6 +222,10 @@ test_filter_trunc_large () {
 	grep "\"key\":\"filter-trunc-large\",\"value\":\"$1\"" $2
 }
 
+test_filter_upgraded () {
+	grep "\"key\":\"filter-upgraded\",\"value\":\"$1\"" $2
+}
+
 test_expect_success 'correctly report changes over limit' '
 	git init limits &&
 	(
@@ -656,7 +660,13 @@ test_expect_success 'when writing another commit graph, preserve existing versio
 test_expect_success 'when writing commit graph, do not reuse changed-path of another version' '
 	git init doublewrite &&
 	test_commit -C doublewrite c "$CENT" &&
+
 	git -C doublewrite config --add commitgraph.changedPathsVersion 1 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C doublewrite commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
 	git -C doublewrite commit-graph write --reachable --changed-paths &&
 	for v in -2 3
 	do
@@ -667,8 +677,13 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano
 		EOF
 		test_cmp expect err || return 1
 	done &&
+
 	git -C doublewrite config --add commitgraph.changedPathsVersion 2 &&
-	git -C doublewrite commit-graph write --reachable --changed-paths &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C doublewrite commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
 	(
 		cd doublewrite &&
 		echo "c01f" >expect &&
@@ -677,6 +692,24 @@ test_expect_success 'when writing commit graph, do not reuse changed-path of ano
 	)
 '
 
+test_expect_success 'when writing commit graph, reuse changed-path of another version where possible' '
+	git init upgrade &&
+
+	test_commit -C upgrade base no-high-bits &&
+
+	git -C upgrade config --add commitgraph.changedPathsVersion 1 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C upgrade commit-graph write --reachable --changed-paths &&
+	test_filter_computed 1 trace2.txt &&
+	test_filter_upgraded 0 trace2.txt &&
+
+	git -C upgrade config --add commitgraph.changedPathsVersion 2 &&
+	GIT_TRACE2_EVENT="$(pwd)/trace2.txt" \
+		git -C upgrade commit-graph write --reachable --changed-paths &&
+	test_filter_computed 0 trace2.txt &&
+	test_filter_upgraded 1 trace2.txt
+'
+
 corrupt_graph () {
 	test_when_finished "rm -rf $graph" &&
 	git commit-graph write --reachable --changed-paths &&
-- 
2.43.0.334.gd4dbce1db5.dirty

[PATCH v5 17/17] bloom: introduce `deinit_bloom_filters()`

[Taylor Blau]

After we are done using Bloom filters, we do not currently clean up any
memory allocated by the commit slab used to store those filters in the
first place.

Besides the bloom_filter structures themselves, there is mostly nothing
to free() in the first place, since in the read-only path all Bloom
filter's `data` members point to a memory mapped region in the
commit-graph file itself.

But when generating Bloom filters from scratch (or initializing
truncated filters) we allocate additional memory to store the filter's
data.

Keep track of when we need to free() this additional chunk of memory by
using an extra pointer `to_free`. Most of the time this will be NULL
(indicating that we are representing an existing Bloom filter stored in
a memory mapped region). When it is non-NULL, free it before discarding
the Bloom filters slab.

Suggested-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
---
 bloom.c        | 16 +++++++++++++++-
 bloom.h        |  3 +++
 commit-graph.c |  4 ++++
 3 files changed, 22 insertions(+), 1 deletion(-)

diff --git a/bloom.c b/bloom.c
index a1c616bc71..dbcc0f4f50 100644
--- a/bloom.c
+++ b/bloom.c
@@ -92,6 +92,7 @@ int load_bloom_filter_from_graph(struct commit_graph *g,
 					sizeof(unsigned char) * start_index +
 					BLOOMDATA_CHUNK_HEADER_SIZE);
 	filter->version = g->bloom_filter_settings->hash_version;
+	filter->to_free = NULL;
 
 	return 1;
 }
@@ -264,6 +265,18 @@ void init_bloom_filters(void)
 	init_bloom_filter_slab(&bloom_filters);
 }
 
+static void free_one_bloom_filter(struct bloom_filter *filter)
+{
+	if (!filter)
+		return;
+	free(filter->to_free);
+}
+
+void deinit_bloom_filters(void)
+{
+	deep_clear_bloom_filter_slab(&bloom_filters, free_one_bloom_filter);
+}
+
 static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 		       const struct hashmap_entry *eptr,
 		       const struct hashmap_entry *entry_or_key,
@@ -280,7 +293,7 @@ static int pathmap_cmp(const void *hashmap_cmp_fn_data UNUSED,
 static void init_truncated_large_filter(struct bloom_filter *filter,
 					int version)
 {
-	filter->data = xmalloc(1);
+	filter->data = filter->to_free = xmalloc(1);
 	filter->data[0] = 0xFF;
 	filter->len = 1;
 	filter->version = version;
@@ -482,6 +495,7 @@ struct bloom_filter *get_or_compute_bloom_filter(struct repository *r,
 			filter->len = 1;
 		}
 		CALLOC_ARRAY(filter->data, filter->len);
+		filter->to_free = filter->data;
 
 		hashmap_for_each_entry(&pathmap, &iter, e, entry) {
 			struct bloom_key key;
diff --git a/bloom.h b/bloom.h
index e3a9b68905..d20e64bfbb 100644
--- a/bloom.h
+++ b/bloom.h
@@ -56,6 +56,8 @@ struct bloom_filter {
 	unsigned char *data;
 	size_t len;
 	int version;
+
+	void *to_free;
 };
 
 /*
@@ -96,6 +98,7 @@ void add_key_to_filter(const struct bloom_key *key,
 		       const struct bloom_filter_settings *settings);
 
 void init_bloom_filters(void);
+void deinit_bloom_filters(void);
 
 enum bloom_filter_computed {
 	BLOOM_NOT_COMPUTED = (1 << 0),
diff --git a/commit-graph.c b/commit-graph.c
index b285e32043..1841638801 100644
--- a/commit-graph.c
+++ b/commit-graph.c
@@ -830,6 +830,7 @@ struct bloom_filter_settings *get_bloom_filter_settings(struct repository *r)
 void close_commit_graph(struct raw_object_store *o)
 {
 	clear_commit_graph_data_slab(&commit_graph_data_slab);
+	deinit_bloom_filters();
 	free_commit_graph(o->commit_graph);
 	o->commit_graph = NULL;
 }
@@ -2648,6 +2649,9 @@ int write_commit_graph(struct object_directory *odb,
 
 	res = write_commit_graph_file(ctx);
 
+	if (ctx->changed_paths)
+		deinit_bloom_filters();
+
 	if (ctx->split)
 		mark_commit_graphs(ctx);
 
-- 
2.43.0.334.gd4dbce1db5.dirty

Re: [PATCH v5 09/17] repo-settings: introduce commitgraph.changedPathsVersion

[SZEDER Gábor]

On Tue, Jan 16, 2024 at 05:09:28PM -0500, Taylor Blau wrote:
> A subsequent commit will introduce another version of the changed-path
> filter in the commit graph file. In order to control which version to
> write (and read), a config variable is needed.
> 
> Therefore, introduce this config variable. For forwards compatibility,
> teach Git to not read commit graphs when the config variable
> is set to an unsupported version. Because we teach Git this,
> commitgraph.readChangedPaths is now redundant, so deprecate it and
> define its behavior in terms of the config variable we introduce.
> 
> This commit does not change the behavior of writing (Git writes changed
> path filters when explicitly instructed regardless of any config
> variable), but a subsequent commit will restrict Git such that it will
> only write when commitgraph.changedPathsVersion is a recognized value.
> 
> Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
> Signed-off-by: Junio C Hamano <gitster@pobox.com>
> Signed-off-by: Taylor Blau <me@ttaylorr.com>
> ---
>  Documentation/config/commitgraph.txt | 26 ++++++++++++++++++++++---
>  commit-graph.c                       |  5 +++--
>  oss-fuzz/fuzz-commit-graph.c         |  2 +-
>  repo-settings.c                      |  6 +++++-
>  repository.h                         |  2 +-
>  t/t4216-log-bloom.sh                 | 29 +++++++++++++++++++++++++++-
>  6 files changed, 61 insertions(+), 9 deletions(-)
> 
> diff --git a/Documentation/config/commitgraph.txt b/Documentation/config/commitgraph.txt
> index 30604e4a4c..e68cdededa 100644
> --- a/Documentation/config/commitgraph.txt
> +++ b/Documentation/config/commitgraph.txt
> @@ -9,6 +9,26 @@ commitGraph.maxNewFilters::
>  	commit-graph write` (c.f., linkgit:git-commit-graph[1]).
>  
>  commitGraph.readChangedPaths::
> -	If true, then git will use the changed-path Bloom filters in the
> -	commit-graph file (if it exists, and they are present). Defaults to
> -	true. See linkgit:git-commit-graph[1] for more information.
> +	Deprecated. Equivalent to commitGraph.changedPathsVersion=-1 if true, and
> +	commitGraph.changedPathsVersion=0 if false. (If commitGraph.changedPathVersion
> +	is also set, commitGraph.changedPathsVersion takes precedence.)
> +
> +commitGraph.changedPathsVersion::
> +	Specifies the version of the changed-path Bloom filters that Git will read and
> +	write. May be -1, 0 or 1. Note that values greater than 1 may be
> +	incompatible with older versions of Git which do not yet understand
> +	those versions. Use caution when operating in a mixed-version
> +	environment.
> ++
> +Defaults to -1.
> ++
> +If -1, Git will use the version of the changed-path Bloom filters in the
> +repository, defaulting to 1 if there are none.
> ++
> +If 0, Git will not read any Bloom filters, and will write version 1 Bloom
> +filters when instructed to write.
> ++
> +If 1, Git will only read version 1 Bloom filters, and will write version 1
> +Bloom filters.
> ++
> +See linkgit:git-commit-graph[1] for more information.
> diff --git a/commit-graph.c b/commit-graph.c
> index 00113b0f62..91c98ebc6c 100644
> --- a/commit-graph.c
> +++ b/commit-graph.c
> @@ -459,7 +459,7 @@ struct commit_graph *parse_commit_graph(struct repo_settings *s,
>  			graph->read_generation_data = 1;
>  	}
>  
> -	if (s->commit_graph_read_changed_paths) {
> +	if (s->commit_graph_changed_paths_version) {
>  		read_chunk(cf, GRAPH_CHUNKID_BLOOMINDEXES,
>  			   graph_read_bloom_index, graph);
>  		read_chunk(cf, GRAPH_CHUNKID_BLOOMDATA,
> @@ -555,7 +555,8 @@ static void validate_mixed_bloom_settings(struct commit_graph *g)
>  		}
>  
>  		if (g->bloom_filter_settings->bits_per_entry != settings->bits_per_entry ||
> -		    g->bloom_filter_settings->num_hashes != settings->num_hashes) {
> +		    g->bloom_filter_settings->num_hashes != settings->num_hashes ||
> +		    g->bloom_filter_settings->hash_version != settings->hash_version) {
>  			g->chunk_bloom_indexes = NULL;
>  			g->chunk_bloom_data = NULL;
>  			FREE_AND_NULL(g->bloom_filter_settings);
> diff --git a/oss-fuzz/fuzz-commit-graph.c b/oss-fuzz/fuzz-commit-graph.c
> index 2992079dd9..325c0b991a 100644
> --- a/oss-fuzz/fuzz-commit-graph.c
> +++ b/oss-fuzz/fuzz-commit-graph.c
> @@ -19,7 +19,7 @@ int LLVMFuzzerTestOneInput(const uint8_t *data, size_t size)
>  	 * possible.
>  	 */
>  	the_repository->settings.commit_graph_generation_version = 2;
> -	the_repository->settings.commit_graph_read_changed_paths = 1;
> +	the_repository->settings.commit_graph_changed_paths_version = 1;
>  	g = parse_commit_graph(&the_repository->settings, (void *)data, size);
>  	repo_clear(the_repository);
>  	free_commit_graph(g);
> diff --git a/repo-settings.c b/repo-settings.c
> index 30cd478762..c821583fe5 100644
> --- a/repo-settings.c
> +++ b/repo-settings.c
> @@ -23,6 +23,7 @@ void prepare_repo_settings(struct repository *r)
>  	int value;
>  	const char *strval;
>  	int manyfiles;
> +	int read_changed_paths;
>  
>  	if (!r->gitdir)
>  		BUG("Cannot add settings for uninitialized repository");
> @@ -53,7 +54,10 @@ void prepare_repo_settings(struct repository *r)
>  	/* Commit graph config or default, does not cascade (simple) */
>  	repo_cfg_bool(r, "core.commitgraph", &r->settings.core_commit_graph, 1);
>  	repo_cfg_int(r, "commitgraph.generationversion", &r->settings.commit_graph_generation_version, 2);
> -	repo_cfg_bool(r, "commitgraph.readchangedpaths", &r->settings.commit_graph_read_changed_paths, 1);
> +	repo_cfg_bool(r, "commitgraph.readchangedpaths", &read_changed_paths, 1);
> +	repo_cfg_int(r, "commitgraph.changedpathsversion",
> +		     &r->settings.commit_graph_changed_paths_version,
> +		     read_changed_paths ? -1 : 0);
>  	repo_cfg_bool(r, "gc.writecommitgraph", &r->settings.gc_write_commit_graph, 1);
>  	repo_cfg_bool(r, "fetch.writecommitgraph", &r->settings.fetch_write_commit_graph, 0);
>  
> diff --git a/repository.h b/repository.h
> index 5f18486f64..f71154e12c 100644
> --- a/repository.h
> +++ b/repository.h
> @@ -29,7 +29,7 @@ struct repo_settings {
>  
>  	int core_commit_graph;
>  	int commit_graph_generation_version;
> -	int commit_graph_read_changed_paths;
> +	int commit_graph_changed_paths_version;
>  	int gc_write_commit_graph;
>  	int fetch_write_commit_graph;
>  	int command_requires_full_index;
> diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
> index 484dd093cd..642b960893 100755
> --- a/t/t4216-log-bloom.sh
> +++ b/t/t4216-log-bloom.sh
> @@ -435,7 +435,7 @@ test_expect_success 'setup for mixed Bloom setting tests' '
>  	done
>  '
>  
> -test_expect_success 'ensure incompatible Bloom filters are ignored' '
> +test_expect_success 'ensure Bloom filters with incompatible settings are ignored' '
>  	# Compute Bloom filters with "unusual" settings.
>  	git -C $repo rev-parse one >in &&
>  	GIT_TEST_BLOOM_SETTINGS_NUM_HASHES=3 git -C $repo commit-graph write \
> @@ -485,6 +485,33 @@ test_expect_success 'merge graph layers with incompatible Bloom settings' '
>  	test_must_be_empty err
>  '
>  
> +test_expect_success 'ensure Bloom filter with incompatible versions are ignored' '
> +	rm "$repo/$graph" &&
> +
> +	git -C $repo log --oneline --no-decorate -- $CENT >expect &&
> +
> +	# Compute v1 Bloom filters for commits at the bottom.
> +	git -C $repo rev-parse HEAD^ >in &&
> +	git -C $repo commit-graph write --stdin-commits --changed-paths \
> +		--split <in &&
> +
> +	# Compute v2 Bloomfilters for the rest of the commits at the top.
> +	git -C $repo rev-parse HEAD >in &&
> +	git -C $repo -c commitGraph.changedPathsVersion=2 commit-graph write \
> +		--stdin-commits --changed-paths --split=no-merge <in &&
> +
> +	test_line_count = 2 $repo/$chain &&
> +
> +	git -C $repo log --oneline --no-decorate -- $CENT >actual 2>err &&
> +	test_cmp expect actual &&
> +
> +	layer="$(head -n 1 $repo/$chain)" &&
> +	cat >expect.err <<-EOF &&
> +	warning: disabling Bloom filters for commit-graph layer $SQ$layer$SQ due to incompatible settings
> +	EOF
> +	test_cmp expect.err err
> +'

At this point in the series this test fails with:

  + test_cmp expect.err err
  + test 2 -ne 2
  + eval diff -u "$@"
  + diff -u expect.err err
  --- expect.err  2024-01-29 21:02:57.927462620 +0000
  +++ err 2024-01-29 21:02:57.923462642 +0000
  @@ -1 +0,0 @@
  -warning: disabling Bloom filters for commit-graph layer 'e338a7a1b4cfa5f6bcd31aea3e027df67d06442a' due to incompatible settings
  error: last command exited with $?=1


> +
>  get_first_changed_path_filter () {
>  	test-tool read-graph bloom-filters >filters.dat &&
>  	head -n 1 filters.dat
> -- 
> 2.43.0.334.gd4dbce1db5.dirty
> 

Re: [PATCH v5 09/17] repo-settings: introduce commitgraph.changedPathsVersion

[Taylor Blau]

On Mon, Jan 29, 2024 at 10:26:14PM +0100, SZEDER Gábor wrote:
> At this point in the series this test fails with:
>
>   + test_cmp expect.err err
>   + test 2 -ne 2
>   + eval diff -u "$@"
>   + diff -u expect.err err
>   --- expect.err  2024-01-29 21:02:57.927462620 +0000
>   +++ err 2024-01-29 21:02:57.923462642 +0000
>   @@ -1 +0,0 @@
>   -warning: disabling Bloom filters for commit-graph layer 'e338a7a1b4cfa5f6bcd31aea3e027df67d06442a' due to incompatible settings
>   error: last command exited with $?=1

Very good catch, thanks, I'm not sure how this one slipped through.

The fix should be mostly trivial, but I'll have to reroll the series
since it has some minor fallout outside of just this patch.

Junio, please hold off on merging this to 'next' until I've had a chance
to send out a new round.

Thanks,
Taylor